Dinghuibacter silviterrae strain DSM 100059

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Dinghuibacter

Description

Dinghuibacter silviterrae strain DSM 100059 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain thrives optimally at a temperature of 29°C, situating it within the mesophilic temperature range. Its genomic structure is marked by a single replicon, and it is cataloged under the accession number SODV00000000.1. As a member of the microbial community, Dinghuibacter silviterrae may play a role in various ecological processes, potentially contributing to nutrient cycling in its habitat. The aerobic nature of this bacterium suggests it requires oxygen for growth, which may influence its distribution in environments where oxygen levels are variable. The optimal growth temperature of 29°C indicates that it may be well adapted to moderate thermal conditions, promoting its survival and activity in temperate ecosystems. The non-motility of Dinghuibacter silviterrae could limit its ability to actively seek out resources or escape unfavorable conditions; however, it may rely on passive dispersal mechanisms. Understanding the ecological roles and interactions of such microbes can provide insights into the dynamics of microbial communities and their influence on ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusDinghuibacter
SpeciesDinghuibacter silviterrae
Strainstrain DSM 100059

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dinghuibacter silviterrae strain DSM 100059 Ga0244717_14, whole

Gene Summary

Adenine Count

1446260 bp

Thymine Count

1427555 bp

Guanine Count

1808983 bp

Cytosine Count

1814377 bp

Genome Length

6497175 bp

Protein-coding Genes

5399 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEDB95_2248Not AvailablePositive2513184 - 25133936871.28
hypothetical proteinEDB95_2249Not AvailablePositive2513523 - 25138289757.79
helix-turn-helix proteinEDB95_2250Not AvailablePositive2514123 - 251489629184.6
crp-like camp-binding proteinEDB95_2251Not AvailablePositive2514979 - 251557523142.3
hypothetical proteinEDB95_2252Not AvailablePositive2515619 - 25158107054.65
uncharacterized protein (duf885 family)EDB95_2253Not AvailableNegative2515939 - 251766366512.3
d-amino-acid dehydrogenaseEDB95_2254Not AvailableNegative2517675 - 251891945115.9
4-hydroxyproline epimeraseEDB95_2255Not AvailableNegative2518923 - 251992436510.9
4-hydroxy-tetrahydrodipicolinate synthaseEDB95_2256Not AvailableNegative2519921 - 252085634013.5
tonb-linked susc/raga family outer membrane proteinEDB95_2257Not AvailablePositive2521082 - 2524099109392.0

Displaying genes 2241 – 2250 of 2402 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.