Thiopseudomonas denitrificans strain DSM 28679

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Thiopseudomonas

Description

Thiopseudomonas denitrificans strain DSM 28679 is characterized by a single replicon, indicating a streamlined genetic organization. This strain is of particular interest due to its role in the biogeochemical cycling of nitrogen and sulfur. Accession number SNYK00000000.1 provides a reference for its genomic data, facilitating further studies on its metabolic pathways. As a member of the Thiopseudomonas genus, this strain is known for its capacity to utilize sulfur compounds and participate in denitrification processes. Denitrification is a crucial microbial function that converts nitrates into nitrogen gas, thus playing a significant role in reducing nitrogen levels in various ecosystems. This trait not only helps mitigate nitrogen pollution but also contributes to the maintenance of nitrogen balance in the environment. The presence of a single replicon in Thiopseudomonas denitrificans strain DSM 28679 may suggest a potential for efficient replication and regulation of its metabolic functions. This streamlined genetic architecture could allow for rapid adaptation to environmental changes, enhancing its ecological resilience. In summary, Thiopseudomonas denitrificans strain DSM 28679 is a genetically simple yet functionally significant bacterium that contributes to critical environmental processes, particularly in nitrogen and sulfur cycling. Understanding its biology further could provide insights into ecological dynamics and biotechnological applications aimed at managing nitrogen levels in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusThiopseudomonas
SpeciesThiopseudomonas denitrificans
Strainstrain DSM 28679

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiopseudomonas denitrificans strain DSM 28679 Ga0244576_126,

Gene Summary

Adenine Count

576758 bp

Thymine Count

584960 bp

Guanine Count

850188 bp

Cytosine Count

819662 bp

Genome Length

2832987 bp

Protein-coding Genes

2570 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)DFQ45_11314Not AvailablePositive2361629 - 236216519314.2
lipopolysaccharide export system protein lptcDFQ45_11315Not AvailablePositive2362174 - 236274320905.4
lipopolysaccharide export system protein lptaDFQ45_11316Not AvailablePositive2362730 - 236326619329.8
lipopolysaccharide export system atp-binding proteinDFQ45_11317Not AvailablePositive2363263 - 236398826561.2
rna polymerase rpon-/sigl-like sigma 54 subunitDFQ45_11318Not AvailablePositive2364208 - 236571356414.4
ssu ribosomal protein s30p /sigma 54 modulation proteinDFQ45_11319Not AvailablePositive2365947 - 236625511658.1
phosphotransferase iia-like nitrogen-regulatory protein ptsnDFQ45_11320Not AvailablePositive2366259 - 236673216661.2
upf0042 nucleotide-binding proteinDFQ45_11321Not AvailablePositive2366736 - 236760832905.4
phosphocarrier proteinDFQ45_11322Not AvailablePositive2367605 - 236790110390.4
putative sos response-associated peptidase yedkDFQ45_11323Not AvailableNegative2367867 - 236851424329.1

Displaying genes 2181 – 2190 of 2623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.