Thiopseudomonas denitrificans strain DSM 28679

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Thiopseudomonas

Description

Thiopseudomonas denitrificans strain DSM 28679 is characterized by a single replicon, indicating a streamlined genetic organization. This strain is of particular interest due to its role in the biogeochemical cycling of nitrogen and sulfur. Accession number SNYK00000000.1 provides a reference for its genomic data, facilitating further studies on its metabolic pathways. As a member of the Thiopseudomonas genus, this strain is known for its capacity to utilize sulfur compounds and participate in denitrification processes. Denitrification is a crucial microbial function that converts nitrates into nitrogen gas, thus playing a significant role in reducing nitrogen levels in various ecosystems. This trait not only helps mitigate nitrogen pollution but also contributes to the maintenance of nitrogen balance in the environment. The presence of a single replicon in Thiopseudomonas denitrificans strain DSM 28679 may suggest a potential for efficient replication and regulation of its metabolic functions. This streamlined genetic architecture could allow for rapid adaptation to environmental changes, enhancing its ecological resilience. In summary, Thiopseudomonas denitrificans strain DSM 28679 is a genetically simple yet functionally significant bacterium that contributes to critical environmental processes, particularly in nitrogen and sulfur cycling. Understanding its biology further could provide insights into ecological dynamics and biotechnological applications aimed at managing nitrogen levels in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusThiopseudomonas
SpeciesThiopseudomonas denitrificans
Strainstrain DSM 28679

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiopseudomonas denitrificans strain DSM 28679


Gene Summary

Adenine Count

576758 bp

Thymine Count

584960 bp

Guanine Count

850188 bp

Cytosine Count

819662 bp

Genome Length

2832987 bp

Protein-coding Genes

2570 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
signal recognition particle subunit ffh/srp54 (srp54)DFQ45_1106Not AvailablePositive2028635 - 203001149653.2
ssu ribosomal protein s16pDFQ45_1107Not AvailablePositive2030129 - 20303809395.27
16s rrna processing protein rimmDFQ45_1108Not AvailablePositive2030407 - 203092819522.1
trna (guanine37-n(1)-) methyltransferaseDFQ45_1109Not AvailablePositive2030903 - 203170029374.2
lsu ribosomal protein l19pDFQ45_11010Not AvailablePositive2031724 - 203207413037.9
tyrosine recombinase xerd subunitDFQ45_11011Not AvailablePositive2032398 - 203330033854.0
hypothetical proteinDFQ45_11012Not AvailablePositive2033391 - 20335706538.83
protein-s-isoprenylcysteine o-methyltransferase ste14DFQ45_11013Not AvailablePositive2033701 - 203415617564.3
translation initiation factor 1 (eif-1/sui1)DFQ45_11014Not AvailablePositive2034198 - 203456612612.3
hypothetical proteinDFQ45_11015Not AvailableNegative2034604 - 20347867022.88

Displaying genes 1881 – 1890 of 2623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.