Flagellimonas alvinocaridis strain SCR12

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flagellimonas

Description

Flagellimonas alvinocaridis strain SCR12 is characterized as a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure. The strain is documented under the accession number SNTZ00000000.1, which provides a reference for its genomic data. The Gram-negative classification is significant as it suggests specific structural components in the bacterial cell wall, including a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structure can influence the bacterium's interactions with its environment, including its susceptibility to antibiotics and its ability to form biofilms. As a member of the genus Flagellimonas, this strain is likely adapted to specific ecological niches, potentially including marine or deep-sea environments, given the typical habitats of related species. The rod shape may confer advantages in motility and nutrient acquisition in such environments, although specific ecological roles for Flagellimonas alvinocaridis strain SCR12 are not delineated in the available data. In summary, the characteristics of Flagellimonas alvinocaridis strain SCR12, including its Gram-negative status, rod shape, and singular replicon, suggest specialized adaptations that may allow it to thrive in specific ecological contexts. Further investigation into its ecological interactions could provide insights into its role in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlagellimonas
SpeciesFlagellimonas alvinocaridis
Strainstrain SCR12

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flagellimonas alvinocaridis strain SCR12 scaffold_199, whole

Gene Summary

Adenine Count

1075594 bp

Thymine Count

1084480 bp

Guanine Count

799267 bp

Cytosine Count

786615 bp

Genome Length

3747248 bp

Protein-coding Genes

3340 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-tyrosyl-trna(tyr) deacylaseEZV76_10510Not AvailableNegative2293919 - 229437116502.9
ribosome small subunit-dependent gtpase aEZV76_10515Not AvailableNegative2294371 - 229530635200.9
hypothetical proteinEZV76_10520Not AvailablePositive2295400 - 229584016452.6
3-deoxy-7-phosphoheptulonate synthaseEZV76_10525Not AvailableNegative2295919 - 229700140865.1
prephenate dehydrogenaseEZV76_10530Not AvailableNegative2297003 - 229786932361.0
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeEZV76_10535Not AvailableNegative2297873 - 229901542029.6
prephenate dehydrataseEZV76_10540Not AvailableNegative2299012 - 229984231077.8
gliding motility-associated abc transporter atp-binding subunit gldaEZV76_10545Not AvailablePositive2300217 - 230111033507.5
group iii truncated hemoglobinEZV76_10550Not AvailableNegative2301107 - 230152316611.7
marr family transcriptional regulatorEZV76_10555Not AvailableNegative2301531 - 230213622880.5

Displaying genes 2101 – 2110 of 3390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.