Flagellimonas alvinocaridis strain SCR12

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flagellimonas

Description

Flagellimonas alvinocaridis strain SCR12 is characterized as a Gram-negative, rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genetic structure. The strain is documented under the accession number SNTZ00000000.1, which provides a reference for its genomic data. The Gram-negative classification is significant as it suggests specific structural components in the bacterial cell wall, including a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structure can influence the bacterium's interactions with its environment, including its susceptibility to antibiotics and its ability to form biofilms. As a member of the genus Flagellimonas, this strain is likely adapted to specific ecological niches, potentially including marine or deep-sea environments, given the typical habitats of related species. The rod shape may confer advantages in motility and nutrient acquisition in such environments, although specific ecological roles for Flagellimonas alvinocaridis strain SCR12 are not delineated in the available data. In summary, the characteristics of Flagellimonas alvinocaridis strain SCR12, including its Gram-negative status, rod shape, and singular replicon, suggest specialized adaptations that may allow it to thrive in specific ecological contexts. Further investigation into its ecological interactions could provide insights into its role in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlagellimonas
SpeciesFlagellimonas alvinocaridis
Strainstrain SCR12

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flagellimonas alvinocaridis strain SCR12 scaffold_199, whole

Gene Summary

Adenine Count

1075594 bp

Thymine Count

1084480 bp

Guanine Count

799267 bp

Cytosine Count

786615 bp

Genome Length

3747248 bp

Protein-coding Genes

3340 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arac family transcriptional regulatorEZV76_08100Not AvailablePositive1771103 - 177196633108.1
rida family proteinEZV76_08105Not AvailableNegative1772007 - 177259120778.2
aminotransferase class v-fold plp-dependent enzymeEZV76_08110Not AvailableNegative1772605 - 177375942114.0
amidohydrolase/deacetylase family metallohydrolaseEZV76_08115Not AvailableNegative1773887 - 177512244938.7
c-type cytochromeEZV76_08120Not AvailableNegative1775172 - 177693865186.8
duf5107 domain-containing proteinEZV76_08125Not AvailableNegative1776950 - 1780045117562.0
rna-binding proteinEZV76_08130Not AvailableNegative1780042 - 1783335121113.0
susd/ragb family nutrient-binding outer membrane lipoproteinEZV76_08135Not AvailableNegative1783417 - 178499458904.7
susc/raga family tonb-linked outer membrane proteinEZV76_08140Not AvailableNegative1785005 - 1788355122793.0
duf4974 domain-containing proteinEZV76_08145Not AvailableNegative1788503 - 178953739017.6

Displaying genes 1621 – 1630 of 3390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.