Rhizobium deserti strain SPY-1 ZB100028

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium deserti strain SPY-1 ZB100028 is characterized by its rod shape and the presence of flagella, which are essential for motility and environmental adaptation. This strain possesses a single replicon, indicating a streamlined genomic organization that may contribute to its efficiency in specific ecological niches. The accession number for this strain is SMTL00000000.1, which can be referenced for further genomic and taxonomic studies. The presence of flagella suggests that R. deserti strain SPY-1 ZB100028 is capable of active movement, potentially aiding in the colonization of plant roots, which is a critical aspect of its symbiotic relationship with legumes. In ecological terms, Rhizobium species, including R. deserti, play a significant role in nitrogen fixation, a process that enriches soil fertility and supports plant growth. This particular strain’s adaptations, including its motility and genetic organization, may influence its effectiveness in forming nodules on host plants under arid conditions, where it is likely to thrive. Understanding the traits of R. deserti strain SPY-1 ZB100028 can provide insights into its ecological interactions and the broader implications for sustainable agriculture in desert environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium deserti
Strainstrain SPY-1 ZB100028

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium deserti strain SPY-1 ZB100028
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium deserti strain SPY-1 ZB100028, whole genome shotgun

Gene Summary

Adenine Count

955067 bp

Thymine Count

945631 bp

Guanine Count

1409466 bp

Cytosine Count

1437510 bp

Genome Length

4747674 bp

Protein-coding Genes

4367 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
parb/repb/spo0j family partition proteinE2F50_21300Not AvailableNegative4431964 - 443284232147.4
para family proteinE2F50_21305Not AvailableNegative4432870 - 443366128795.8
16s rrna (guanine(527)-n(7))-methyltransferase rsmgE2F50_21310Not AvailableNegative4433669 - 443428922728.0
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgE2F50_21315Not AvailableNegative4434289 - 443616667880.0
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeE2F50_21320Not AvailableNegative4436203 - 443750446943.0
transcription termination factor rhoE2F50_21325Not AvailableNegative4437589 - 443885446920.8
protoporphyrinogen oxidase hemjE2F50_21330Not AvailableNegative4439033 - 443957820303.6
uroporphyrinogen decarboxylaseE2F50_21335Not AvailableNegative4439575 - 444060937550.3
kinase/pyrophosphorylaseE2F50_21340Not AvailablePositive4441010 - 444183130535.9
maf-like proteinE2F50_21345Not AvailablePositive4441858 - 444245121674.1

Displaying genes 4191 – 4200 of 4477 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.