Rhizobium deserti strain SPY-1 ZB100028

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium deserti strain SPY-1 ZB100028 is characterized by its rod shape and the presence of flagella, which are essential for motility and environmental adaptation. This strain possesses a single replicon, indicating a streamlined genomic organization that may contribute to its efficiency in specific ecological niches. The accession number for this strain is SMTL00000000.1, which can be referenced for further genomic and taxonomic studies. The presence of flagella suggests that R. deserti strain SPY-1 ZB100028 is capable of active movement, potentially aiding in the colonization of plant roots, which is a critical aspect of its symbiotic relationship with legumes. In ecological terms, Rhizobium species, including R. deserti, play a significant role in nitrogen fixation, a process that enriches soil fertility and supports plant growth. This particular strain’s adaptations, including its motility and genetic organization, may influence its effectiveness in forming nodules on host plants under arid conditions, where it is likely to thrive. Understanding the traits of R. deserti strain SPY-1 ZB100028 can provide insights into its ecological interactions and the broader implications for sustainable agriculture in desert environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium deserti
Strainstrain SPY-1 ZB100028

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium deserti strain SPY-1 ZB100028
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium deserti strain SPY-1 ZB100028, whole genome shotgun

Gene Summary

Adenine Count

955067 bp

Thymine Count

945631 bp

Guanine Count

1409466 bp

Cytosine Count

1437510 bp

Genome Length

4747674 bp

Protein-coding Genes

4367 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease phE2F50_13965Not AvailablePositive2887722 - 288844125726.8
glyoxalase/bleomycin resistance/extradiol dioxygenase family proteinE2F50_13970Not AvailablePositive2888457 - 288894817817.3
rdgb/ham1 family non-canonical purine ntp pyrophosphataseE2F50_13975Not AvailablePositive2888873 - 288951723360.2
coproporphyrinogen iii oxidaseE2F50_13980Not AvailablePositive2889450 - 289071846758.5
class i sam-dependent methyltransferaseE2F50_13985Not AvailableNegative2890764 - 289136322245.2
lyse family translocatorE2F50_13990Not AvailableNegative2891369 - 289198922063.8
chromosomal replication initiator protein dnaaE2F50_13995Not AvailableNegative2891991 - 289355658175.0
30s ribosomal protein s20E2F50_14000Not AvailableNegative2894398 - 28946649427.49
enoyl-coa hydrataseE2F50_14005Not AvailableNegative2894844 - 289561727335.3
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseE2F50_14010Not AvailableNegative2895631 - 289650932345.7

Displaying genes 2761 – 2770 of 4477 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.