Rhizobium deserti strain SPY-1 ZB100028

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium deserti strain SPY-1 ZB100028 is characterized by its rod shape and the presence of flagella, which are essential for motility and environmental adaptation. This strain possesses a single replicon, indicating a streamlined genomic organization that may contribute to its efficiency in specific ecological niches. The accession number for this strain is SMTL00000000.1, which can be referenced for further genomic and taxonomic studies. The presence of flagella suggests that R. deserti strain SPY-1 ZB100028 is capable of active movement, potentially aiding in the colonization of plant roots, which is a critical aspect of its symbiotic relationship with legumes. In ecological terms, Rhizobium species, including R. deserti, play a significant role in nitrogen fixation, a process that enriches soil fertility and supports plant growth. This particular strain’s adaptations, including its motility and genetic organization, may influence its effectiveness in forming nodules on host plants under arid conditions, where it is likely to thrive. Understanding the traits of R. deserti strain SPY-1 ZB100028 can provide insights into its ecological interactions and the broader implications for sustainable agriculture in desert environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium deserti
Strainstrain SPY-1 ZB100028

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium deserti strain SPY-1 ZB100028
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium deserti strain SPY-1 ZB100028, whole genome shotgun

Gene Summary

Adenine Count

955067 bp

Thymine Count

945631 bp

Guanine Count

1409466 bp

Cytosine Count

1437510 bp

Genome Length

4747674 bp

Protein-coding Genes

4367 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sos response-associated peptidaseE2F50_13265Not AvailableNegative2750382 - 275098122102.2
giy-yig nuclease family proteinE2F50_13270Not AvailableNegative2751232 - 275152511463.8
fad-dependent oxidoreductaseE2F50_13275Not AvailableNegative2751829 - 275404579543.5
acetyl-coa c-acetyltransferaseE2F50_13280Not AvailableNegative2754065 - 275527342768.4
type ii toxin-antitoxin system pemk/mazf family toxinE2F50_13285Not AvailableNegative2755338 - 275566711809.1
abrb/maze/spovt family dna-binding domain-containing proteinE2F50_13290Not AvailableNegative2755667 - 27559279503.31
acyl-coa dehydrogenaseE2F50_13295Not AvailableNegative2755981 - 275777464471.7
hypothetical proteinE2F50_13300Not AvailableNegative2757944 - 27581447163.64
hemagglutininE2F50_13305Not AvailablePositive2758132 - 2762046139314.0
sulfite exporter taue/safe family proteinE2F50_13310Not AvailablePositive2762288 - 276321432727.7

Displaying genes 2621 – 2630 of 4477 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.