Rhizobium deserti strain SPY-1 ZB100028

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium deserti strain SPY-1 ZB100028 is characterized by its rod shape and the presence of flagella, which are essential for motility and environmental adaptation. This strain possesses a single replicon, indicating a streamlined genomic organization that may contribute to its efficiency in specific ecological niches. The accession number for this strain is SMTL00000000.1, which can be referenced for further genomic and taxonomic studies. The presence of flagella suggests that R. deserti strain SPY-1 ZB100028 is capable of active movement, potentially aiding in the colonization of plant roots, which is a critical aspect of its symbiotic relationship with legumes. In ecological terms, Rhizobium species, including R. deserti, play a significant role in nitrogen fixation, a process that enriches soil fertility and supports plant growth. This particular strain’s adaptations, including its motility and genetic organization, may influence its effectiveness in forming nodules on host plants under arid conditions, where it is likely to thrive. Understanding the traits of R. deserti strain SPY-1 ZB100028 can provide insights into its ecological interactions and the broader implications for sustainable agriculture in desert environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium deserti
Strainstrain SPY-1 ZB100028

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium deserti strain SPY-1 ZB100028
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium deserti strain SPY-1 ZB100028, whole genome shotgun

Gene Summary

Adenine Count

955067 bp

Thymine Count

945631 bp

Guanine Count

1409466 bp

Cytosine Count

1437510 bp

Genome Length

4747674 bp

Protein-coding Genes

4367 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit chiE2F50_09360Not AvailableNegative1957308 - 195775717067.1
leucyl aminopeptidaseE2F50_09365Not AvailableNegative1957757 - 195924751780.7
lptf/lptg family permeaseE2F50_09370Not AvailablePositive1959581 - 196075642900.5
lps export abc transporter permease lptgE2F50_09375Not AvailablePositive1960753 - 196184139875.9
lps-assembly protein lptdE2F50_09380Not AvailablePositive1961841 - 196417186235.0
peptidylprolyl isomeraseE2F50_09385Not AvailablePositive1964283 - 196522434278.2
4-hydroxythreonine-4-phosphate dehydrogenase pdxaE2F50_09390Not AvailablePositive1965243 - 196625635161.5
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaE2F50_09395Not AvailablePositive1966256 - 196710130510.0
hypothetical proteinE2F50_09400Not AvailablePositive1967402 - 196801020752.8
duf982 domain-containing proteinE2F50_09405Not AvailablePositive1968120 - 19683658842.49

Displaying genes 1901 – 1910 of 4477 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.