Rhizobium deserti strain SPY-1 ZB100028

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium deserti strain SPY-1 ZB100028 is characterized by its rod shape and the presence of flagella, which are essential for motility and environmental adaptation. This strain possesses a single replicon, indicating a streamlined genomic organization that may contribute to its efficiency in specific ecological niches. The accession number for this strain is SMTL00000000.1, which can be referenced for further genomic and taxonomic studies. The presence of flagella suggests that R. deserti strain SPY-1 ZB100028 is capable of active movement, potentially aiding in the colonization of plant roots, which is a critical aspect of its symbiotic relationship with legumes. In ecological terms, Rhizobium species, including R. deserti, play a significant role in nitrogen fixation, a process that enriches soil fertility and supports plant growth. This particular strain’s adaptations, including its motility and genetic organization, may influence its effectiveness in forming nodules on host plants under arid conditions, where it is likely to thrive. Understanding the traits of R. deserti strain SPY-1 ZB100028 can provide insights into its ecological interactions and the broader implications for sustainable agriculture in desert environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium deserti
Strainstrain SPY-1 ZB100028

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium deserti strain SPY-1 ZB100028
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium deserti strain SPY-1 ZB100028, whole genome shotgun

Gene Summary

Adenine Count

955067 bp

Thymine Count

945631 bp

Guanine Count

1409466 bp

Cytosine Count

1437510 bp

Genome Length

4747674 bp

Protein-coding Genes

4367 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphataseE2F50_09260Not AvailableNegative1937180 - 193834941267.5
nudix domain-containing proteinE2F50_09265Not AvailableNegative1938461 - 193905422698.2
molybdopterin oxidoreductase family proteinE2F50_09270Not AvailableNegative1939051 - 194120178172.8
23s rrna (adenine(2030)-n(6))-methyltransferase rlmjE2F50_09275Not AvailablePositive1941285 - 194214832341.9
ribonucleaseE2F50_09280Not AvailablePositive1942213 - 194286323943.5
glutathione s-transferaseE2F50_09285Not AvailablePositive1942887 - 194348322263.9
porin family proteinE2F50_09290Not AvailableNegative1943545 - 194418322087.3
excinuclease abc subunit uvrcE2F50_09295Not AvailablePositive1944952 - 194688671810.8
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseE2F50_09300Not AvailablePositive1946984 - 194757121536.6
molybdopterin converting factor subunit 1E2F50_09305Not AvailablePositive1947568 - 19478259628.52

Displaying genes 1881 – 1890 of 4477 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.