Delftia tsuruhatensis strain 11304

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Delftia

Description

Delftia tsuruhatensis strain 11304 is a notable bacterium primarily found in the roots of plants. This strain possesses a single replicon, indicating a streamlined genomic structure, which may contribute to its adaptability and efficiency in its habitat. It is characterized by the presence of flagella, allowing for motility, which can be advantageous for colonizing root environments and interacting with plant hosts. The strain has been identified in association with specific plant hosts, namely Triticum aestivum (common wheat) and Ipomoea batatas (sweet potato). This association suggests a potential role in plant-microbe interactions, which might include promoting plant growth or influencing nutrient uptake in these crops. The accession number for this strain is SMMJ00000000.1, which serves as a reference for genetic and genomic studies. Understanding the characteristics and ecological roles of Delftia tsuruhatensis strain 11304 may provide insights into its potential applications in agriculture, particularly in enhancing the health and productivity of economically important plants like wheat and sweet potato. The presence of flagella further indicates its capability to navigate and establish itself within the complex root microbiome, potentially playing a role in the overall health of the plant ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusDelftia
SpeciesDelftia tsuruhatensis
Strainstrain 11304

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Delftia tsuruhatensis strain 11304
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatroots
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Ipomoea batatas
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Delftia tsuruhatensis strain 11304 scf_39096_215, whole genome

Gene Summary

Adenine Count

1098172 bp

Thymine Count

1099782 bp

Guanine Count

2208383 bp

Cytosine Count

2209339 bp

Genome Length

6615676 bp

Protein-coding Genes

5817 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent fis family transcriptional regulatorEZI45_02080Not AvailablePositive454920 - 45643454377.2
1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampdEZI45_02085Not AvailablePositive456421 - 45706223471.5
ribonucleoside-diphosphate reductase subunit alphaEZI45_02090Not AvailablePositive457592 - 460510107487.0
ribonucleotide-diphosphate reductase subunit betaEZI45_02095Not AvailablePositive460717 - 46181141849.0
hypothetical proteinEZI45_02100Not AvailablePositive461989 - 46294529027.9
carbohydrate kinase family proteinEZI45_02105Not AvailableNegative463043 - 46394532715.3
duf3426 domain-containing proteinEZI45_02110Not AvailableNegative463980 - 46530245903.0
50s ribosomal protein l11 methyltransferaseEZI45_02115Not AvailableNegative465378 - 46626831899.9
acetyl-coa carboxylase biotin carboxylase subunitEZI45_02120Not AvailableNegative466354 - 46771850050.5
acetyl-coa carboxylase biotin carboxyl carrier proteinEZI45_02125Not AvailableNegative467851 - 46831516065.5

Displaying genes 701 – 710 of 6099 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.