Delftia tsuruhatensis strain 11304

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Delftia

Description

Delftia tsuruhatensis strain 11304 is a notable bacterium primarily found in the roots of plants. This strain possesses a single replicon, indicating a streamlined genomic structure, which may contribute to its adaptability and efficiency in its habitat. It is characterized by the presence of flagella, allowing for motility, which can be advantageous for colonizing root environments and interacting with plant hosts. The strain has been identified in association with specific plant hosts, namely Triticum aestivum (common wheat) and Ipomoea batatas (sweet potato). This association suggests a potential role in plant-microbe interactions, which might include promoting plant growth or influencing nutrient uptake in these crops. The accession number for this strain is SMMJ00000000.1, which serves as a reference for genetic and genomic studies. Understanding the characteristics and ecological roles of Delftia tsuruhatensis strain 11304 may provide insights into its potential applications in agriculture, particularly in enhancing the health and productivity of economically important plants like wheat and sweet potato. The presence of flagella further indicates its capability to navigate and establish itself within the complex root microbiome, potentially playing a role in the overall health of the plant ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusDelftia
SpeciesDelftia tsuruhatensis
Strainstrain 11304

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Delftia tsuruhatensis strain 11304
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatroots
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Ipomoea batatas
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Delftia tsuruhatensis strain 11304 scf_39096_215, whole genome

Gene Summary

Adenine Count

1098172 bp

Thymine Count

1099782 bp

Guanine Count

2208383 bp

Cytosine Count

2209339 bp

Genome Length

6615676 bp

Protein-coding Genes

5817 genes

Non-Coding Genes

282 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rieske (2fe-2s) proteinEZI45_05445Not AvailableNegative1200025 - 120039313188.6
had family hydrolaseEZI45_05450Not AvailableNegative1200443 - 120112924434.2
rlua family pseudouridine synthaseEZI45_05455Not AvailableNegative1201154 - 120215837382.1
hypothetical proteinEZI45_05460Not AvailableNegative1202173 - 120246310568.8
rne/rng family ribonucleaseEZI45_05465Not AvailablePositive1202751 - 1205882114605.0
peroxide stress protein yaaaEZI45_05470Not AvailablePositive1205990 - 120677529378.3
2-oxoglutarate-dependent dioxygenaseEZI45_05475Not AvailablePositive1206854 - 120773832314.4
nadph-dependent 7-cyano-7-deazaguanine reductase quefEZI45_05480Not AvailablePositive1207895 - 120874332013.2
duf3141 domain-containing proteinEZI45_05485Not AvailableNegative1209200 - 121141381600.0
hypothetical proteinEZI45_05490Not AvailableNegative1211530 - 121206318883.1

Displaying genes 1331 – 1340 of 6099 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.