Biostraticola tofi strain DSM 19580

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Bruguierivoracaceae

Genus

Biostraticola

Description

Biostraticola tofi strain DSM 19580 is characterized by a single replicon, indicating that its genomic structure consists of one circular chromosome. This trait may suggest a streamlined genetic organization typical of certain prokaryotic organisms, which can facilitate efficient replication and gene regulation. The strain is cataloged under the accession number SMCR00000000.1, providing a reference for researchers seeking to access its genomic data. This accession number is crucial for scientific communication, allowing for the verification and examination of the genomic features associated with Biostraticola tofi. Understanding the genetic framework of Biostraticola tofi can offer insights into its ecological roles. As a member of the microbial community, the strain may contribute to various biogeochemical processes, potentially influencing nutrient cycling and organic matter decomposition in its environment. The functional capabilities inferred from its genomic content could be explored further to assess its interactions within its ecosystem, though specific functional traits remain unspecified in the current data. Overall, the genetic simplicity indicated by the presence of a single replicon in Biostraticola tofi strain DSM 19580 poses interesting questions about its adaptability and ecological significance, warranting further investigation into its environmental interactions and contributions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyBruguierivoracaceae
GenusBiostraticola
SpeciesBiostraticola tofi
Strainstrain DSM 19580

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Biostraticola tofi strain DSM 19580 Ga0244679_132, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3858 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion protein tEDC52_104111Not AvailablePositive2263420 - 226419628419.8
type iii secretion protein uEDC52_104112Not AvailablePositive2264145 - 226523941420.6
type iii secretion system low calcium response chaperone lcrh/sycdEDC52_104113Not AvailablePositive2265361 - 226584918559.7
type iii secretion system translocon protein (yopb/ipab/sipb family)EDC52_104114Not AvailablePositive2265846 - 226763364120.1
hypothetical proteinEDC52_104115Not AvailableNegative2267779 - 22679074739.11
ipac/sipc-like invasin protein cEDC52_104116Not AvailablePositive2268187 - 226933240861.3
type iii secretion system ipad/sipd/sspd family effectorEDC52_104117Not AvailablePositive2269362 - 227044739192.9
hypothetical proteinEDC52_104118Not AvailablePositive2270454 - 227227464592.9
acyl carrier proteinEDC52_104119Not AvailablePositive2272408 - 227268310432.5
type iii secretion system prgh/eprh family proteinEDC52_104120Not AvailablePositive2272960 - 227414743838.6

Displaying genes 2111 – 2120 of 4009 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.