Vibrio crassostreae strain 28_FP_15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio crassostreae strain 28_FP_15 is characterized by having a single replicon, which may suggest a streamlined genetic structure. This strain is associated with the Ostreidae family, indicating its ecological relevance to oyster species. Its pathogenicity is noted to be animal-based, highlighting its potential impact on marine life, particularly within oyster populations. The genetic data for this strain is cataloged under the accession number SMAW00000000.1, providing a reference for researchers interested in studying its genomic features or pathogenic mechanisms. Understanding Vibrio crassostreae's interaction with its oyster hosts is crucial, as it may inform strategies for managing health in aquaculture settings or wild populations. The association of V. crassostreae with Ostreidae suggests a specific ecological niche where this bacterium may play a role in the health dynamics of oyster ecosystems. Given its pathogenic potential, monitoring this strain could be essential for maintaining the balance within these marine environments, especially in the context of environmental changes or disease outbreaks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio crassostreae
Strainstrain 28_FP_15

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio crassostreae strain 28_FP_15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Ostreidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Vibrio crassostreae strain 28_FP_15 Ga0265625_166, whole genome

Gene Summary

Adenine Count

1627894 bp

Thymine Count

1628272 bp

Guanine Count

1278288 bp

Cytosine Count

1289886 bp

Genome Length

5824367 bp

Protein-coding Genes

5154 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylisocitrate lyaseEDB40_101546Not AvailablePositive642348 - 64324432394.7
2-methylcitrate synthaseEDB40_101547Not AvailablePositive643392 - 64460344685.3
aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming)EDB40_101548Not AvailablePositive644705 - 64732996350.1
2-methylaconitate cis-trans isomeraseEDB40_101549Not AvailablePositive647339 - 64851141051.0
propionyl-coa synthetaseEDB40_101550Not AvailablePositive648630 - 65053470183.9
hypothetical proteinEDB40_101551Not AvailablePositive650683 - 65112916108.3
outer membrane protein with glycine zipperEDB40_101552Not AvailablePositive651366 - 65177613973.3
ribosomal protein s18 acetylase rimi-like enzymeEDB40_101553Not AvailablePositive651980 - 65245918481.0
8-oxo-dgtp pyrophosphatase mutt (nudix family)EDB40_101554Not AvailablePositive652532 - 65394451786.9
hypothetical proteinEDB40_101555Not AvailableNegative654022 - 65483129380.0

Displaying genes 591 – 600 of 5313 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.