Vibrio crassostreae strain 28_FP_15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio crassostreae strain 28_FP_15 is characterized by having a single replicon, which may suggest a streamlined genetic structure. This strain is associated with the Ostreidae family, indicating its ecological relevance to oyster species. Its pathogenicity is noted to be animal-based, highlighting its potential impact on marine life, particularly within oyster populations. The genetic data for this strain is cataloged under the accession number SMAW00000000.1, providing a reference for researchers interested in studying its genomic features or pathogenic mechanisms. Understanding Vibrio crassostreae's interaction with its oyster hosts is crucial, as it may inform strategies for managing health in aquaculture settings or wild populations. The association of V. crassostreae with Ostreidae suggests a specific ecological niche where this bacterium may play a role in the health dynamics of oyster ecosystems. Given its pathogenic potential, monitoring this strain could be essential for maintaining the balance within these marine environments, especially in the context of environmental changes or disease outbreaks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio crassostreae
Strainstrain 28_FP_15

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio crassostreae strain 28_FP_15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Ostreidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Vibrio crassostreae strain 28_FP_15 Ga0265625_166, whole genome

Gene Summary

Adenine Count

1627894 bp

Thymine Count

1628272 bp

Guanine Count

1278288 bp

Cytosine Count

1289886 bp

Genome Length

5824367 bp

Protein-coding Genes

5154 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine transport system substrate-binding proteinEDB40_12144Not AvailableNegative5181486 - 518247836504.9
4-hydroxy-3-polyprenylbenzoate decarboxylaseEDB40_12146Not AvailableNegative5182695 - 518331822359.3
udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligaseEDB40_12147Not AvailableNegative5183357 - 518471549569.9
d-fructose 1,6-bisphosphataseEDB40_12148Not AvailablePositive5184986 - 518599637153.1
uncharacterized protein duf2799EDB40_12149Not AvailableNegative5186089 - 518644513133.5
gamma-glutamylcyclotransferase (ggct)/aig2-like uncharacterized protein ytfpEDB40_12150Not AvailableNegative5186527 - 518688313815.5
autotransporter secretion inner membrane protein tambEDB40_12151Not AvailableNegative5186931 - 5190689135495.0
autotransporter secretion outer membrane protein tamaEDB40_12152Not AvailableNegative5190686 - 519239863723.9
peptide-methionine (s)-s-oxide reductaseEDB40_12153Not AvailablePositive5192594 - 519322323275.2
uncharacterized protein duf1107EDB40_12154Not AvailableNegative5193332 - 51935327525.32

Displaying genes 4641 – 4650 of 5313 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.