Vibrio crassostreae strain 28_FP_15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio crassostreae strain 28_FP_15 is characterized by having a single replicon, which may suggest a streamlined genetic structure. This strain is associated with the Ostreidae family, indicating its ecological relevance to oyster species. Its pathogenicity is noted to be animal-based, highlighting its potential impact on marine life, particularly within oyster populations. The genetic data for this strain is cataloged under the accession number SMAW00000000.1, providing a reference for researchers interested in studying its genomic features or pathogenic mechanisms. Understanding Vibrio crassostreae's interaction with its oyster hosts is crucial, as it may inform strategies for managing health in aquaculture settings or wild populations. The association of V. crassostreae with Ostreidae suggests a specific ecological niche where this bacterium may play a role in the health dynamics of oyster ecosystems. Given its pathogenic potential, monitoring this strain could be essential for maintaining the balance within these marine environments, especially in the context of environmental changes or disease outbreaks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio crassostreae
Strainstrain 28_FP_15

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio crassostreae strain 28_FP_15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Ostreidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Vibrio crassostreae strain 28_FP_15 Ga0265625_166, whole genome

Gene Summary

Adenine Count

1627894 bp

Thymine Count

1628272 bp

Guanine Count

1278288 bp

Cytosine Count

1289886 bp

Genome Length

5824367 bp

Protein-coding Genes

5154 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative membrane protein ydjx (tvp38/tmem64 family)EDB40_101144Not AvailableNegative175032 - 17571224443.6
regulator of competence-specific genesEDB40_101145Not AvailableNegative175843 - 17643322196.7
laci family transcriptional regulatorEDB40_101147Not AvailableNegative176817 - 17782137570.1
Ncrna_class:otherNot AvailableNot AvailablePositive178274 - 178486Not Available
tat proofreading chaperone tordEDB40_101148Not AvailableNegative178137 - 17878424683.1
two-component system torcad operon response regulator torrEDB40_101149Not AvailablePositive179070 - 17978326769.1
uncharacterized sam-binding protein ycdf (duf218 family)EDB40_101150Not AvailableNegative179899 - 18075031135.3
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylaseEDB40_101151Not AvailablePositive180866 - 18165129630.7
condensin subunit mukfEDB40_101152Not AvailablePositive181777 - 18311450865.9
condensin subunit mukeEDB40_101153Not AvailablePositive183095 - 18390130185.7

Displaying genes 231 – 240 of 5313 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.