Sphingobacterium sp. JUb20

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. JUb20 is a rod-shaped bacterium characterized by the presence of a single replicon. This trait is significant as it may influence the organism's replication dynamics and genetic stability. The specific accession number for this strain is SLYV00000000.1, which provides a reference for genomic information and facilitates further research and identification in microbial databases. The rod shape of Sphingobacterium sp. JUb20 indicates its classification within the Sphingobacterium genus, which is known for its diverse metabolic capabilities and adaptability to various environments. Members of this genus are often found in soil and aquatic habitats, contributing to the decomposition of organic materials and playing a role in nutrient cycling. The ecological role of Sphingobacterium sp. JUb20 can be tied to its potential interactions within microbial communities, where it may assist in the breakdown of complex compounds and improve soil health. Understanding the specific characteristics of Sphingobacterium sp. JUb20 can provide insights into its ecological functions and potential applications in bioremediation or agriculture, where enhancing soil microbial diversity is crucial for sustainability. Overall, this strain exemplifies the functional diversity of the Sphingobacterium genus and highlights the importance of microbial life in ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. JUb20
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. JUb20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. JUb20 Ga0304818_138, whole genome shotgun

Gene Summary

Adenine Count

1997563 bp

Thymine Count

1988589 bp

Guanine Count

1138378 bp

Cytosine Count

1123156 bp

Genome Length

6247893 bp

Protein-coding Genes

5291 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
condensin subunit scpbEDF66_110175Not AvailablePositive4323673 - 432423321157.6
hypothetical proteinEDF66_110176Not AvailablePositive4324387 - 43245576366.86
helix-turn-helix proteinEDF66_110177Not AvailableNegative4324677 - 432500612561.3
udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligaseEDF66_110178Not AvailableNegative4325080 - 432645051768.0
ribosomal protein l11 methyltransferaseEDF66_110179Not AvailableNegative4326455 - 432729732018.9
triosephosphate isomeraseEDF66_110180Not AvailableNegative4327307 - 432807427544.7
udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferaseEDF66_110181Not AvailableNegative4328081 - 432930145211.3
lsu ribosomal protein l31pEDF66_110182Not AvailableNegative4329380 - 43296289681.54
uncharacterized protein duf2853EDF66_110183Not AvailablePositive4329868 - 433020612584.3
cellulose/xylan binding protein with cbm9 domainEDF66_110184Not AvailableNegative4330230 - 433088325618.9

Displaying genes 3691 – 3700 of 5366 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.