Sphingobacterium sp. JUb20

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. JUb20 is a rod-shaped bacterium characterized by the presence of a single replicon. This trait is significant as it may influence the organism's replication dynamics and genetic stability. The specific accession number for this strain is SLYV00000000.1, which provides a reference for genomic information and facilitates further research and identification in microbial databases. The rod shape of Sphingobacterium sp. JUb20 indicates its classification within the Sphingobacterium genus, which is known for its diverse metabolic capabilities and adaptability to various environments. Members of this genus are often found in soil and aquatic habitats, contributing to the decomposition of organic materials and playing a role in nutrient cycling. The ecological role of Sphingobacterium sp. JUb20 can be tied to its potential interactions within microbial communities, where it may assist in the breakdown of complex compounds and improve soil health. Understanding the specific characteristics of Sphingobacterium sp. JUb20 can provide insights into its ecological functions and potential applications in bioremediation or agriculture, where enhancing soil microbial diversity is crucial for sustainability. Overall, this strain exemplifies the functional diversity of the Sphingobacterium genus and highlights the importance of microbial life in ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. JUb20
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. JUb20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. JUb20 Ga0304818_138, whole genome shotgun

Gene Summary

Adenine Count

1997563 bp

Thymine Count

1988589 bp

Guanine Count

1138378 bp

Cytosine Count

1123156 bp

Genome Length

6247893 bp

Protein-coding Genes

5291 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein with beta-barrel domainEDF66_107158Not AvailablePositive3326499 - 332717925108.6
polyphosphate kinase 2EDF66_107159Not AvailableNegative3327203 - 332801231847.4
duf3050 family proteinEDF66_107160Not AvailablePositive3328452 - 332921629443.3
endonuclease/exonuclease/phosphatase family metal-dependent hydrolaseEDF66_107161Not AvailablePositive3329313 - 333022735126.7
fkbp-type peptidyl-prolyl isomerase-like proteinEDF66_107162Not AvailablePositive3330352 - 333078615835.2
dihydroneopterin aldolaseEDF66_107163Not AvailablePositive3331023 - 333138813747.7
peptidyl-prolyl cis-trans isomerase b (cyclophilin b)EDF66_107164Not AvailablePositive3333091 - 333372924060.0
putative phosphodiesteraseEDF66_107165Not AvailableNegative3333783 - 333451127791.6
hypothetical proteinEDF66_107166Not AvailablePositive3334719 - 333557931289.2
aminoglycoside 6-adenylyltransferaseEDF66_107167Not AvailableNegative3335702 - 333655633524.1

Displaying genes 2821 – 2830 of 5366 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.