Pseudomonas sp. JUb52

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. JUb52 is characterized by having a single replicon, which indicates that it possesses a singular circular DNA molecule typical of many prokaryotic organisms. The genome of this strain is catalogued under the accession number SLYS00000000.1, allowing for reference and further studies in microbial genomics. Pseudomonas species are known for their metabolic versatility and adaptability to a wide range of environments. This trait allows them to thrive in various ecological niches, including soil, water, and as opportunistic pathogens. The specific ecological role of Pseudomonas sp. JUb52 is not detailed in the provided traits, but the genus is generally recognized for its ability to degrade organic pollutants and contribute to nutrient cycling. The presence of a single replicon in Pseudomonas sp. JUb52 suggests a streamlined genomic organization, which can be advantageous for rapid growth and adaptation to changing environmental conditions. This trait is often associated with species that have evolved to occupy specific ecological roles, potentially enhancing their survival in competitive environments. In conclusion, Pseudomonas sp. JUb52, with its single replicon and unique genomic accession, represents a fascinating subject for further research. Understanding its metabolic capabilities and ecological interactions could provide insights into its role in bioremediation and ecosystem functioning, reflecting the broader ecological significance of the Pseudomonas genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. JUb52
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. JUb52
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. JUb52 Ga0304790_148, whole genome shotgun

Gene Summary

Adenine Count

886973 bp

Thymine Count

881178 bp

Guanine Count

1668967 bp

Cytosine Count

1692234 bp

Genome Length

5129362 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadp-dependent 3-hydroxy acid dehydrogenase ydfgEC839_11822Not AvailableNegative4683231 - 468398927028.2
putative aconitase subunit 1EC839_11823Not AvailableNegative4684240 - 468596160137.0
amino acid/amide abc transporter atp-binding protein 2 (haat family)EC839_11824Not AvailableNegative4685964 - 468668026459.3
amino acid/amide abc transporter atp-binding protein 1 (haat family)EC839_11825Not AvailableNegative4686677 - 468755232242.0
amino acid/amide abc transporter membrane protein 2 (haat family)EC839_11826Not AvailableNegative4687549 - 468882946198.5
amino acid/amide abc transporter membrane protein 1 (haat family)EC839_11827Not AvailableNegative4688833 - 468974732486.9
amino acid/amide abc transporter substrate-binding protein (haat family)EC839_11828Not AvailableNegative4689844 - 469096539493.9
glycine/d-amino acid oxidase-like deaminating enzymeEC839_11829Not AvailableNegative4691459 - 469273646408.6
delta-1-piperideine-6-carboxylate dehydrogenaseEC839_11830Not AvailableNegative4692761 - 469425153193.4
dna-binding transcriptional lysr family regulatorEC839_11831Not AvailablePositive4694365 - 469524933424.1

Displaying genes 4441 – 4450 of 4826 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.