Pseudomonas sp. JUb52

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. JUb52 is characterized by having a single replicon, which indicates that it possesses a singular circular DNA molecule typical of many prokaryotic organisms. The genome of this strain is catalogued under the accession number SLYS00000000.1, allowing for reference and further studies in microbial genomics. Pseudomonas species are known for their metabolic versatility and adaptability to a wide range of environments. This trait allows them to thrive in various ecological niches, including soil, water, and as opportunistic pathogens. The specific ecological role of Pseudomonas sp. JUb52 is not detailed in the provided traits, but the genus is generally recognized for its ability to degrade organic pollutants and contribute to nutrient cycling. The presence of a single replicon in Pseudomonas sp. JUb52 suggests a streamlined genomic organization, which can be advantageous for rapid growth and adaptation to changing environmental conditions. This trait is often associated with species that have evolved to occupy specific ecological roles, potentially enhancing their survival in competitive environments. In conclusion, Pseudomonas sp. JUb52, with its single replicon and unique genomic accession, represents a fascinating subject for further research. Understanding its metabolic capabilities and ecological interactions could provide insights into its role in bioremediation and ecosystem functioning, reflecting the broader ecological significance of the Pseudomonas genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. JUb52
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. JUb52
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. JUb52 Ga0304790_148, whole genome shotgun

Gene Summary

Adenine Count

886973 bp

Thymine Count

881178 bp

Guanine Count

1668967 bp

Cytosine Count

1692234 bp

Genome Length

5129362 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEC839_10980Not AvailableNegative3407838 - 34080296866.21
osmoprotectant transport system permease proteinEC839_10981Not AvailablePositive3408749 - 340945924667.4
osmoprotectant transport system substrate-binding proteinEC839_10982Not AvailablePositive3409469 - 341037132816.2
osmoprotectant transport system permease proteinEC839_10983Not AvailablePositive3410375 - 341103423389.8
osmoprotectant transport system atp-binding proteinEC839_10984Not AvailablePositive3411045 - 341219942765.5
l,d-transpeptidase-like proteinEC839_10985Not AvailableNegative3412250 - 341278620247.7
adp-ribose pyrophosphatase yjhb (nudix family)EC839_10986Not AvailableNegative3412810 - 341336420590.8
8-oxo-dgtp pyrophosphatase mutt (nudix family)EC839_10987Not AvailablePositive3413492 - 341407921559.9
hypothetical proteinEC839_10988Not AvailablePositive3414157 - 34143547146.53
formate-dependent phosphoribosylglycinamide formyltransferaseEC839_10989Not AvailablePositive3414376 - 341555742217.5

Displaying genes 3251 – 3260 of 4826 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.