Pseudomonas sp. JUb52

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. JUb52 is characterized by having a single replicon, which indicates that it possesses a singular circular DNA molecule typical of many prokaryotic organisms. The genome of this strain is catalogued under the accession number SLYS00000000.1, allowing for reference and further studies in microbial genomics. Pseudomonas species are known for their metabolic versatility and adaptability to a wide range of environments. This trait allows them to thrive in various ecological niches, including soil, water, and as opportunistic pathogens. The specific ecological role of Pseudomonas sp. JUb52 is not detailed in the provided traits, but the genus is generally recognized for its ability to degrade organic pollutants and contribute to nutrient cycling. The presence of a single replicon in Pseudomonas sp. JUb52 suggests a streamlined genomic organization, which can be advantageous for rapid growth and adaptation to changing environmental conditions. This trait is often associated with species that have evolved to occupy specific ecological roles, potentially enhancing their survival in competitive environments. In conclusion, Pseudomonas sp. JUb52, with its single replicon and unique genomic accession, represents a fascinating subject for further research. Understanding its metabolic capabilities and ecological interactions could provide insights into its role in bioremediation and ecosystem functioning, reflecting the broader ecological significance of the Pseudomonas genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. JUb52
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. JUb52
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. JUb52 Ga0304790_148, whole genome shotgun

Gene Summary

Adenine Count

886973 bp

Thymine Count

881178 bp

Guanine Count

1668967 bp

Cytosine Count

1692234 bp

Genome Length

5129362 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-serine deaminase-like pyridoxal phosphate-dependent proteinEC839_105295Not AvailableNegative2445374 - 244658242594.3
iclr family transcriptional regulatorEC839_105296Not AvailableNegative2446579 - 244735228240.8
reactive intermediate/imine deaminaseEC839_105297Not AvailableNegative2447367 - 244775313922.7
amino acid abc transporter atp-binding protein (paat family)EC839_105298Not AvailableNegative2447782 - 244855828597.7
amino acid abc transporter membrane protein 2 (paat family)EC839_105299Not AvailableNegative2448555 - 244921724067.9
amino acid abc transporter membrane protein 1 (paat family)EC839_105300Not AvailableNegative2449228 - 244989024230.6
amino acid abc transporter substrate-binding protein (paat family)EC839_105301Not AvailableNegative2449950 - 245078630412.2
n-acyl-d-glutamate deacylase/n-acyl-d-amino-acid deacylaseEC839_105302Not AvailableNegative2450995 - 245245851628.5
methyl-accepting chemotaxis proteinEC839_105303Not AvailablePositive2452634 - 245465271708.3
dna polymerase vEC839_105304Not AvailablePositive2454749 - 245518015727.8

Displaying genes 2331 – 2340 of 4826 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.