Vibrio crassostreae strain 16BF1_56

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio crassostreae strain 16BF1_56 is a notable marine bacterium characterized by its single replicon structure. This strain has been associated with the family Ostreidae, indicating its ecological niche primarily involves oysters. The pathogenicity of this strain is significant as it is recognized as an animal pathogen, which suggests it may impact the health of oyster populations. The strain is cataloged under the accession number SLWJ00000000.1, which provides a reference for genetic and genomic studies. Understanding the genetic makeup of Vibrio crassostreae is critical for further research, particularly in the context of its interactions with host organisms and potential implications for aquaculture. The relationship between Vibrio crassostreae and its hosts within the Ostreidae family highlights the importance of monitoring this bacterium in marine ecosystems. Given that it is an animal pathogen, it may play a role in disease dynamics among oyster populations, potentially influencing ecosystem health and stability. This emphasizes the need for ongoing research into the ecological roles of such bacterial strains and their impacts on marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio crassostreae
Strainstrain 16BF1_56

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio crassostreae strain 16BF1_56
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Ostreidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Vibrio crassostreae strain 16BF1_56 Ga0265620_150, whole genome

Gene Summary

Adenine Count

1617593 bp

Thymine Count

1604878 bp

Guanine Count

1267322 bp

Cytosine Count

1284183 bp

Genome Length

5774088 bp

Protein-coding Genes

5142 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
opacity-associated protein a-like proteinEDB30_101353Not AvailableNegative407680 - 40897247579.9
amp-activated protein kinase-like proteinEDB30_101354Not AvailableNegative409250 - 40954911562.6
hypothetical proteinEDB30_101355Not AvailableNegative409676 - 41032924252.1
hypothetical proteinEDB30_101356Not AvailablePositive410425 - 41084415870.9
uncharacterized membrane protein yoak (upf0700 family)EDB30_101357Not AvailablePositive410995 - 41166924200.3
nucleoside recognition membrane protein yjihEDB30_101358Not AvailablePositive411899 - 41326948949.1
methyl-accepting chemotaxis sensory transducer with cache sensorEDB30_101359Not AvailablePositive413702 - 41557367534.4
alpha-amylaseEDB30_101360Not AvailableNegative415686 - 41709252987.9
peptidyl-prolyl cis-trans isomerase cEDB30_101361Not AvailableNegative417375 - 41765310250.8
two-component system chemotaxis response regulator chevEDB30_101362Not AvailablePositive417938 - 41885233533.7

Displaying genes 431 – 440 of 5298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.