Vibrio crassostreae strain 16BF1_56

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio crassostreae strain 16BF1_56 is a notable marine bacterium characterized by its single replicon structure. This strain has been associated with the family Ostreidae, indicating its ecological niche primarily involves oysters. The pathogenicity of this strain is significant as it is recognized as an animal pathogen, which suggests it may impact the health of oyster populations. The strain is cataloged under the accession number SLWJ00000000.1, which provides a reference for genetic and genomic studies. Understanding the genetic makeup of Vibrio crassostreae is critical for further research, particularly in the context of its interactions with host organisms and potential implications for aquaculture. The relationship between Vibrio crassostreae and its hosts within the Ostreidae family highlights the importance of monitoring this bacterium in marine ecosystems. Given that it is an animal pathogen, it may play a role in disease dynamics among oyster populations, potentially influencing ecosystem health and stability. This emphasizes the need for ongoing research into the ecological roles of such bacterial strains and their impacts on marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio crassostreae
Strainstrain 16BF1_56

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio crassostreae strain 16BF1_56
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Ostreidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Vibrio crassostreae strain 16BF1_56 Ga0265620_150, whole genome

Gene Summary

Adenine Count

1617593 bp

Thymine Count

1604878 bp

Guanine Count

1267322 bp

Cytosine Count

1284183 bp

Genome Length

5774088 bp

Protein-coding Genes

5142 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytosine/adenosine deaminase-related metal-dependent hydrolaseEDB30_106249Not AvailablePositive2867042 - 286847852628.2
oligogalacturonate-specific porin protein kdgmEDB30_106250Not AvailablePositive2868753 - 286949628220.4
rpir family transcriptional regulatorEDB30_106251Not AvailableNegative2869617 - 287026123612.5
fructose-specific phosphotransferase system iib componentEDB30_106252Not AvailablePositive2870433 - 287094218379.4
phage repressor protein c with hth and peptisase s24 domainEDB30_106253Not AvailableNegative2871125 - 287182926447.7
nlp family transcriptional regulatorEDB30_106254Not AvailablePositive2872042 - 28722698442.43
mu dna-binding proteinEDB30_106255Not AvailablePositive2872271 - 28725109282.27
atp-dependent clp protease atp-binding subunit clpbEDB30_1072Not AvailableNegative2873155 - 287572895955.4
hypothetical proteinEDB30_1073Not AvailableNegative2875871 - 287661126422.3
ribosomal large subunit pseudouridine synthase dEDB30_1074Not AvailableNegative2876613 - 287758736440.1

Displaying genes 2561 – 2570 of 5298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.