Vibrio crassostreae strain 16BF1_56

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio crassostreae strain 16BF1_56 is a notable marine bacterium characterized by its single replicon structure. This strain has been associated with the family Ostreidae, indicating its ecological niche primarily involves oysters. The pathogenicity of this strain is significant as it is recognized as an animal pathogen, which suggests it may impact the health of oyster populations. The strain is cataloged under the accession number SLWJ00000000.1, which provides a reference for genetic and genomic studies. Understanding the genetic makeup of Vibrio crassostreae is critical for further research, particularly in the context of its interactions with host organisms and potential implications for aquaculture. The relationship between Vibrio crassostreae and its hosts within the Ostreidae family highlights the importance of monitoring this bacterium in marine ecosystems. Given that it is an animal pathogen, it may play a role in disease dynamics among oyster populations, potentially influencing ecosystem health and stability. This emphasizes the need for ongoing research into the ecological roles of such bacterial strains and their impacts on marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio crassostreae
Strainstrain 16BF1_56

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio crassostreae strain 16BF1_56
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Ostreidae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Vibrio crassostreae strain 16BF1_56 Ga0265620_150, whole genome

Gene Summary

Adenine Count

1617593 bp

Thymine Count

1604878 bp

Guanine Count

1267322 bp

Cytosine Count

1284183 bp

Genome Length

5774088 bp

Protein-coding Genes

5142 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
holin-like proteinEDB30_103311Not AvailablePositive1675810 - 167618113386.3
putative murein hydrolase (tigr00659 family)EDB30_103312Not AvailablePositive1676184 - 167686124313.4
cytidine deaminaseEDB30_103313Not AvailablePositive1677148 - 167803531624.5
formate-dependent phosphoribosylglycinamide formyltransferaseEDB30_103314Not AvailablePositive1678203 - 167937842535.7
thiopurine s-methyltransferaseEDB30_103315Not AvailableNegative1679491 - 168014424837.4
hypothetical proteinEDB30_103316Not AvailablePositive1680500 - 168127628593.0
integration host factor subunit alphaEDB30_103317Not AvailableNegative1681549 - 168184511195.4
fur family zinc uptake transcriptional regulatorEDB30_103318Not AvailablePositive1682485 - 168295817849.6
dihydroorotaseEDB30_103319Not AvailablePositive1683027 - 168440950680.6
carbonic anhydrase/acetyltransferase-like protein (isoleucine patch superfamily)EDB30_103320Not AvailablePositive1684473 - 168500619088.7

Displaying genes 1491 – 1500 of 5298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.