Kocuria rosea strain AF099C18 SAMN11029901.1497

Coccusaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria rosea strain AF099C18 SAMN11029901.1497 is a Gram-positive, aerobic coccus that exhibits a cellular arrangement in pairs. This strain has been isolated from diverse environments, including indoor dust and the Iranian Ab-e-Siah hot springs. Notably, it has been identified as a potential pathogen in humans, with documented health effects including endocarditis, peritonitis, nosocomial infections, central line-associated bloodstream infections, and other serious conditions such as brain abscesses, meningitis, bacteremia/sepsis, and acute cholecystitis, particularly in patients with underlying co-morbidities. This strain possesses one replicon and is characterized by the presence of flagella, which may play a role in its motility and ecological interactions. The ability to thrive in various habitats, from dust to hot springs, indicates a significant adaptability, suggesting an ecological versatility that could facilitate its survival in diverse environments, including those inhabited by humans. The pathogenic potential of Kocuria rosea highlights the importance of monitoring environmental reservoirs, such as indoor dust, where this bacterium may reside and pose health risks. Understanding the ecological niches and behaviors of Kocuria rosea could inform infection control practices, especially in healthcare settings where vulnerable populations are present.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria rosea
Strainstrain AF099C18 SAMN11029901.1497

Profile

Physiology
Gram staining propertiesPositive
ShapeCoccus
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Kocuria rosea strain AF099C18 SAMN11029901.1497
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdust; indoor dust; Iranian Ab-e-Siah hot springs; Iranian hot spring; skin
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementPairs
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria rosea strain AF099C18 SAMN11029901.1497, whole genome

Gene Summary

Adenine Count

557442 bp

Thymine Count

557177 bp

Guanine Count

1436121 bp

Cytosine Count

1437906 bp

Genome Length

3988949 bp

Protein-coding Genes

3747 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpaseE1J17_00125Not AvailablePositive24009 - 2488129623.3
eama family transporterE1J17_00130Not AvailablePositive24916 - 2583030665.4
hypothetical proteinE1J17_00135Not AvailablePositive25876 - 260827588.53
fad-dependent oxidoreductaseE1J17_00140Not AvailablePositive26138 - 2727739491.9
voc family proteinE1J17_00145Not AvailablePositive27415 - 2820027745.4
hypothetical proteinE1J17_00150Not AvailableNegative28219 - 2905229718.3
ferritin-like domain-containing proteinE1J17_00155Not AvailableNegative29049 - 2984329630.6
hypothetical proteinE1J17_00160Not AvailablePositive29909 - 301187202.65
glycoside hydrolase family 3 proteinE1J17_00165Not AvailableNegative30202 - 3272788103.4
rhamnulokinaseE1J17_00170Not AvailableNegative32778 - 3425052057.8

Displaying genes 31 – 40 of 3802 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionCausesPMC10071551
Central line-associated bloodstream infectionsCausesPMC10071551
Infection in patients with underlying co-morbiditiesCausesPMC10071551
PeritonitisCausesPMC10071551
Brain abscessesCausesPMC10071551
MeningitisCausesPMC10071551
EndocarditisCausesPMC10071551
Bacteremia/ sepsisCausesPMC10071551
Acute cholecystitisCausesPMC10071551

Displaying health effects 1 – 9 of 9 in total