Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | strain RJX1045 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1922863 bp
Thymine Count
1979528 bp
Guanine Count
1451856 bp
Cytosine Count
1357344 bp
Genome Length
6711591 bp
Protein-coding Genes
5110 genes
Non-Coding Genes
142 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | E1J03_03150 | Not Available | Positive | 693754 - 695775 | 75965.9 |
| tonb-dependent receptor | E1J03_03155 | Not Available | Positive | 696023 - 699433 | 125913.0 |
| ragb/susd family nutrient uptake outer membrane protein | E1J03_03160 | Not Available | Positive | 699464 - 701500 | 74986.5 |
| xylan 1,4-beta-xylosidase | E1J03_03165 | Not Available | Positive | 701510 - 703009 | 56554.8 |
| duf5060 domain-containing protein | E1J03_03170 | Not Available | Positive | 703047 - 704654 | 61917.4 |
| hypothetical protein | E1J03_03175 | Not Available | Positive | 704847 - 707393 | 95044.9 |
| carbohydrate esterase | E1J03_03180 | Not Available | Positive | 707456 - 708976 | 55725.4 |
| rna polymerase sigma-70 factor | E1J03_03185 | Not Available | Positive | 709041 - 709604 | 22502.1 |
| fecr family protein | E1J03_03190 | Not Available | Positive | 709675 - 710607 | 35856.4 |
| susc/raga family tonb-linked outer membrane protein | E1J03_03195 | Not Available | Positive | 710663 - 713962 | 122167.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

