Phocaeicola dorei strain RJX1045

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei strain RJX1045 is a Gram-negative, non-motile, anaerobic bacterium characterized by its rod shape. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds. It thrives optimally at a temperature of 37°C and falls within the mesophilic temperature range, suggesting its preference for moderate thermal conditions. Notably, P. dorei strain RJX1045 does not undergo sporulation, which may influence its survival and adaptability in various environments. The strain contains a single replicon, which is significant for its genetic stability and replication processes. Additionally, the presence of flagella suggests potential for motility in other contexts, although this strain is documented as non-motile. The habitat of Phocaeicola dorei is described as multiple, indicating that it can inhabit various ecological niches. This versatility may allow the strain to adapt to different environmental conditions and contribute to its ecological roles. In summary, Phocaeicola dorei strain RJX1045 exemplifies a specialized anaerobic lifestyle, thriving in diverse habitats while utilizing organic matter as an energy source. Its characteristics, including mesophilic growth and non-sporulating nature, highlight its potential ecological significance in environments where organic substrates are readily available, contributing to nutrient cycling and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
Strainstrain RJX1045

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei strain RJX1045
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain RJX1045 contig040, whole genome shotgun

Gene Summary

Adenine Count

1922863 bp

Thymine Count

1979528 bp

Guanine Count

1451856 bp

Cytosine Count

1357344 bp

Genome Length

6711591 bp

Protein-coding Genes

5110 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-dehydro-4-deoxy-d-glucuronate isomeraseE1J03_03090Not AvailableNegative673258 - 67421435996.2
pts sugar transporter subunit iicE1J03_03095Not AvailableNegative674233 - 67562449960.0
glycoside hydrolase family 88 proteinE1J03_03100Not AvailablePositive675914 - 67714347092.3
pectin esteraseE1J03_03105Not AvailablePositive677158 - 67810835858.5
tonb-dependent receptorE1J03_03110Not AvailablePositive678327 - 681599118856.0
ragb/susd family nutrient uptake outer membrane proteinE1J03_03115Not AvailablePositive681632 - 68379779613.6
helix-turn-helix domain-containing proteinE1J03_03120Not AvailablePositive684009 - 68648094320.0
hypothetical proteinE1J03_03130Not AvailablePositive688271 - 68856710664.0
beta-glucosidaseE1J03_03135Not AvailablePositive688596 - 69090585543.9
alpha/beta fold hydrolaseE1J03_03140Not AvailablePositive690902 - 69218547469.1

Displaying genes 661 – 670 of 5252 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.