Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | strain RJX1045 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1922863 bp
Thymine Count
1979528 bp
Guanine Count
1451856 bp
Cytosine Count
1357344 bp
Genome Length
6711591 bp
Protein-coding Genes
5110 genes
Non-Coding Genes
142 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | E1J03_10075 | Not Available | Positive | 2302374 - 2305691 | 123184.0 |
| ragb/susd family nutrient uptake outer membrane protein | E1J03_10080 | Not Available | Positive | 2305700 - 2307721 | 76346.5 |
| polysaccharide lyase | E1J03_10090 | Not Available | Positive | 2309938 - 2311671 | 64469.9 |
| duf3826 domain-containing protein | E1J03_10095 | Not Available | Positive | 2311696 - 2312364 | 25101.4 |
| polysaccharide lyase | E1J03_10100 | Not Available | Positive | 2312564 - 2314246 | 61355.8 |
| pectate lyase | E1J03_10105 | Not Available | Positive | 2314248 - 2317334 | 115868.0 |
| sigma-70 family rna polymerase sigma factor | E1J03_10110 | Not Available | Positive | 2317521 - 2318075 | 21454.0 |
| hypothetical protein | E1J03_10115 | Not Available | Positive | 2318124 - 2318408 | 11154.4 |
| tonb-dependent receptor | E1J03_10120 | Not Available | Positive | 2318443 - 2321634 | 118311.0 |
| ragb/susd family nutrient uptake outer membrane protein | E1J03_10125 | Not Available | Positive | 2321663 - 2323618 | 73864.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

