Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | strain RJX1045 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1922863 bp
Thymine Count
1979528 bp
Guanine Count
1451856 bp
Cytosine Count
1357344 bp
Genome Length
6711591 bp
Protein-coding Genes
5110 genes
Non-Coding Genes
142 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | E1J03_07850 | Not Available | Negative | 1799842 - 1800582 | 27738.7 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | E1J03_07855 | Not Available | Negative | 1800601 - 1801338 | 27961.9 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | E1J03_07860 | Not Available | Negative | 1801435 - 1802379 | 35902.1 |
| phoh family protein | E1J03_07865 | Not Available | Negative | 1802400 - 1803404 | 37669.5 |
| hypothetical protein | E1J03_07870 | Not Available | Positive | 1803562 - 1804236 | 24792.2 |
| trna pseudouridine(38-40) synthase trua | E1J03_07875 | Not Available | Positive | 1804241 - 1805044 | 31005.9 |
| putative dna modification/repair radical sam protein | E1J03_07885 | Not Available | Negative | 1805773 - 1807041 | 48590.9 |
| peptidylprolyl isomerase | E1J03_07890 | Not Available | Negative | 1807469 - 1808035 | 20612.2 |
| hypothetical protein | E1J03_07895 | Not Available | Positive | 1808391 - 1808765 | 14063.1 |
| dihydroxy-acid dehydratase | E1J03_07900 | Not Available | Positive | 1809176 - 1810978 | 64145.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

