Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | strain RJX1045 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1922863 bp
Thymine Count
1979528 bp
Guanine Count
1451856 bp
Cytosine Count
1357344 bp
Genome Length
6711591 bp
Protein-coding Genes
5110 genes
Non-Coding Genes
142 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-histidine dipeptidase | E1J03_06380 | Not Available | Positive | 1480748 - 1482205 | 53162.8 |
| endonuclease | E1J03_06385 | Not Available | Positive | 1482211 - 1483221 | 38222.8 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | E1J03_06390 | Not Available | Negative | 1483297 - 1483770 | 18403.7 |
| carboxylating nicotinate-nucleotide diphosphorylase | E1J03_06395 | Not Available | Positive | 1483851 - 1484702 | 31277.2 |
| helix-turn-helix domain-containing protein | E1J03_06400 | Not Available | Negative | 1484817 - 1487684 | 110485.0 |
| glycoside hydrolase family 16 protein | E1J03_06405 | Not Available | Positive | 1487926 - 1488702 | 30025.5 |
| tonb-dependent receptor | E1J03_06410 | Not Available | Positive | 1488771 - 1491812 | 112644.0 |
| ragb/susd family nutrient uptake outer membrane protein | E1J03_06415 | Not Available | Positive | 1491834 - 1493453 | 60660.0 |
| duf4923 family protein | E1J03_06420 | Not Available | Positive | 1493698 - 1494294 | 21583.3 |
| recombinase reca | E1J03_06425 | Not Available | Negative | 1494480 - 1495523 | 37306.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

