Escherichia coli strain SL3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SL3 is a Gram-negative, rod-shaped bacterium typically found in pairs or singles. This strain is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It possesses flagella, which contribute to its mobility, and it is mesophilic, with an optimal growth temperature of 37°C. E. coli SL3 is associated with a diverse range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and many others, indicating its widespread ecological presence across different species, including mammals, birds, and even some plants like Solanum lycopersicum (tomato) and Brassica oleracea var. italica (broccoli). As a free-living organism, it interacts with various hosts, potentially influencing their health. The strain is notably pathogenic, linked to a variety of health effects in humans, such as urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like hemolytic uremic syndrome (HUS) and neonatal meningitis. Its ability to cause both intestinal and extraintestinal diseases highlights its significant role in clinical microbiology and public health. The diverse host range and pathogenic potential of E. coli SL3 underscore the ecological and health implications of this strain. It exemplifies how a single microbial species can inhabit numerous environments and interact with various hosts, leading to significant health outcomes, particularly in human populations. Understanding such relationships is crucial for developing strategies to manage infections and mitigate their impact on health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SL3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SL3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SL3 SL3_S3__paired__contig_718, whole

Gene Summary

Adenine Count

1325089 bp

Thymine Count

1326663 bp

Guanine Count

1349738 bp

Cytosine Count

1353487 bp

Genome Length

5355602 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
octaprenyl-diphosphate synthaseEYY78_08170Not AvailablePositive1616271 - 161724235219.1
dna-binding transcriptional regulator sfsbEYY78_08175Not AvailablePositive1617469 - 161774710463.5
udp-n-acetylglucosamine 1-carboxyvinyltransferaseEYY78_08180Not AvailableNegative1617795 - 161905444820.4
bola family iron metabolism protein ibagEYY78_08185Not AvailableNegative1619109 - 16193639452.29
lipid asymmetry maintenance protein mlabEYY78_08190Not AvailableNegative1619523 - 161981610667.0
phospholipid-binding protein mlacEYY78_08195Not AvailableNegative1619816 - 162045123964.0
outer membrane lipid asymmetry maintenance protein mladEYY78_08200Not AvailableNegative1620470 - 162102119577.3
lipid asymmetry maintenance abc transporter permease subunit mlaeEYY78_08205Not AvailableNegative1621026 - 162180827865.0
phospholipid abc transporter atp-binding protein mlafEYY78_08210Not AvailableNegative1621816 - 162262529098.6
calcium/sodium antiporterEYY78_08215Not AvailablePositive1622835 - 162381234756.9

Displaying genes 1771 – 1780 of 5494 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total