Edaphobacter modestus strain DSM 18101

Kingdom

Pseudomonadati

Phylum

Acidobacteriota

Class

Terriglobia

Order

Terriglobales

Family

Acidobacteriaceae

Genus

Edaphobacter

Description

Edaphobacter modestus strain DSM 18101 is a mesophilic bacterium with an optimal growth temperature of 29°C. This temperature range indicates that it thrives in moderate thermal conditions, which is typical for many soil-dwelling microorganisms. The strain possesses a single replicon, suggesting a streamlined genetic structure which may contribute to its adaptability in various environments. The strain is cataloged under accession number SHKW00000000.1, providing a reference for researchers interested in its genetic and functional characteristics. While specific metabolic pathways or ecological roles are not detailed, the classification of Edaphobacter species often correlates with soil environments where they may play a role in nutrient cycling and organic matter decomposition. The mesophilic nature of Edaphobacter modestus suggests that it may be well-suited for interactions within temperate soils, contributing to the microbial community dynamics. Its optimal growth at 29°C aligns with typical soil temperatures in many regions, which may facilitate its role in soil health and function. Understanding the traits of Edaphobacter modestus can enhance our knowledge of microbial ecology in soil environments, particularly in relation to nutrient turnover and organic matter degradation.

Taxonomy

KingdomPseudomonadati
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyAcidobacteriaceae
GenusEdaphobacter
SpeciesEdaphobacter modestus
Strainstrain DSM 18101

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Edaphobacter modestus strain DSM 18101
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Edaphobacter modestus strain DSM 18101 Ga0242575_18, whole genome

Gene Summary

Adenine Count

1594229 bp

Thymine Count

1599753 bp

Guanine Count

2130443 bp

Cytosine Count

2120690 bp

Genome Length

7445115 bp

Protein-coding Genes

6092 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alcohol dehydrogenase (cytochrome c)BDD14_1346Not AvailableNegative1523710 - 152526055973.7
cytochrome c oxidase cbb3-type subunit 3BDD14_1347Not AvailableNegative1525287 - 152610829875.4
putative transcriptional regulatorBDD14_1348Not AvailablePositive1526554 - 152694614605.4
beta-lactamase regulating signal transducer with metallopeptidase domainBDD14_1349Not AvailablePositive1526950 - 152825147160.8
serine protease doBDD14_1350Not AvailablePositive1528282 - 152980852657.8
nodt family efflux transporter outer membrane factor (omf) lipoproteinBDD14_1351Not AvailableNegative1529911 - 153135351596.0
rnd family efflux transporter mfp subunitBDD14_1352Not AvailableNegative1531350 - 153264546061.6
czca family heavy metal efflux pumpBDD14_1353Not AvailableNegative1532707 - 1535898115089.0
tetr family transcriptional regulatorBDD14_1354Not AvailableNegative1536004 - 153675027723.1
4-hydroxythreonine-4-phosphate dehydrogenaseBDD14_1355Not AvailableNegative1537068 - 153804834691.0

Displaying genes 1231 – 1240 of 6183 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.