Edaphobacter modestus strain DSM 18101

Kingdom

Pseudomonadati

Phylum

Acidobacteriota

Class

Terriglobia

Order

Terriglobales

Family

Acidobacteriaceae

Genus

Edaphobacter

Description

Edaphobacter modestus strain DSM 18101 is a mesophilic bacterium with an optimal growth temperature of 29°C. This temperature range indicates that it thrives in moderate thermal conditions, which is typical for many soil-dwelling microorganisms. The strain possesses a single replicon, suggesting a streamlined genetic structure which may contribute to its adaptability in various environments. The strain is cataloged under accession number SHKW00000000.1, providing a reference for researchers interested in its genetic and functional characteristics. While specific metabolic pathways or ecological roles are not detailed, the classification of Edaphobacter species often correlates with soil environments where they may play a role in nutrient cycling and organic matter decomposition. The mesophilic nature of Edaphobacter modestus suggests that it may be well-suited for interactions within temperate soils, contributing to the microbial community dynamics. Its optimal growth at 29°C aligns with typical soil temperatures in many regions, which may facilitate its role in soil health and function. Understanding the traits of Edaphobacter modestus can enhance our knowledge of microbial ecology in soil environments, particularly in relation to nutrient turnover and organic matter degradation.

Taxonomy

KingdomPseudomonadati
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyAcidobacteriaceae
GenusEdaphobacter
SpeciesEdaphobacter modestus
Strainstrain DSM 18101

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Edaphobacter modestus strain DSM 18101
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Edaphobacter modestus strain DSM 18101 Ga0242575_18, whole genome

Gene Summary

Adenine Count

1594229 bp

Thymine Count

1599753 bp

Guanine Count

2130443 bp

Cytosine Count

2120690 bp

Genome Length

7445115 bp

Protein-coding Genes

6092 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (cytidine1920-2'-o)/16s rrna (cytidine1409-2'-o)-methyltransferaseBDD14_1215Not AvailableNegative1377522 - 137828627052.8
rna polymerase sigma-70 factor (ecf subfamily)BDD14_1216Not AvailablePositive1378434 - 137897920259.5
anti-sigma-k factor rskaBDD14_1217Not AvailablePositive1378976 - 137991133644.1
yvtn family beta-propeller proteinBDD14_1218Not AvailableNegative1380037 - 138139847142.1
uncharacterized protein (tigr00297 family)BDD14_1219Not AvailablePositive1381474 - 138232529595.5
uncharacterized sam-binding protein ycdf (duf218 family)BDD14_1220Not AvailableNegative1382370 - 138304724728.5
translation factor sua5BDD14_1221Not AvailableNegative1383103 - 138374722937.8
trmh family rna methyltransferaseBDD14_1222Not AvailablePositive1383822 - 138474232470.1
recombination protein mgsaBDD14_1223Not AvailablePositive1384739 - 138607048819.9
peroxiredoxinBDD14_1224Not AvailableNegative1386084 - 138668621789.1

Displaying genes 1111 – 1120 of 6183 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.