Escherichia coli strain EC_09

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain EC_09 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and capable of mobility due to the presence of flagella. This strain is primarily found in host-associated environments, indicating its adaptability to living organisms. It exhibits a mesophilic temperature range, with an optimal growth temperature of 37°C, which is typical for many pathogenic E. coli strains. EC_09 has a single replicon and possesses two membranes, characteristic of its Gram-negative classification. It demonstrates a free-living biotic relationship but is associated with a wide variety of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and numerous other vertebrates and invertebrates. This broad host range indicates its ecological versatility and potential for transmission across different species. The health effects linked to EC_09 are significant, as it is associated with various serious conditions, including urinary tract infections (UTIs), gastrointestinal infections, and neonatal meningitis, among others. The strain is implicated in both foodborne infections and clinical settings, highlighting its pathogenic potential in humans and animals alike. The presence of EC_09 in diverse habitats and its capability to cause a range of health issues underscore the importance of monitoring and understanding this strain. Its impact on both human health and animal welfare suggests that it plays a crucial role in the ecology of pathogenic bacteria, reinforcing the need for continued research and surveillance to mitigate its effects on public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain EC_09

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain EC_09
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain EC_09 NODE_175_length_505_cov_137.866822,

Gene Summary

Adenine Count

1421564 bp

Thymine Count

1410519 bp

Guanine Count

1433058 bp

Cytosine Count

1445522 bp

Genome Length

5711198 bp

Protein-coding Genes

5016 genes

Non-Coding Genes

485 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ychj family proteinEXX06_00225Not AvailablePositive36299 - 3675716973.2
formyltetrahydrofolate deformylaseEXX06_00230Not AvailablePositive36807 - 3764931938.6
Trna-tyrNot AvailableNot AvailablePositive37809 - 37893Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive37941 - 38072Not Available
respiratory nitrate reductase subunit gammaEXX06_00245Not AvailableNegative38256 - 3893325484.9
nitrate reductase molybdenum cofactor assembly chaperoneEXX06_00250Not AvailableNegative38933 - 3964326468.4
nitrate reductase subunit betaEXX06_00255Not AvailableNegative39640 - 4117858069.5
nitrate reductase subunit alphaEXX06_00260Not AvailableNegative41175 - 44918140436.0
nark family nitrate/nitrite mfs transporterEXX06_00265Not AvailableNegative45311 - 4670249696.3
nitrate/nitrite two-component system sensor histidine kinase narxEXX06_00270Not AvailablePositive47041 - 4883767116.0

Displaying genes 521 – 530 of 5501 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total