Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain EC_25 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1317644 bp
Thymine Count
1318563 bp
Guanine Count
1359669 bp
Cytosine Count
1319404 bp
Genome Length
5315401 bp
Protein-coding Genes
4795 genes
Non-Coding Genes
303 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nickel abc transporter permease subunit nikc | EXX23_09520 | Not Available | Positive | 1977802 - 1978635 | 30335.8 |
| nickel import atp-binding protein nikd | EXX23_09525 | Not Available | Positive | 1978635 - 1979399 | 26863.2 |
| nickel import atp-binding protein nike | EXX23_09530 | Not Available | Positive | 1979396 - 1980202 | 29660.3 |
| nickel-responsive transcriptional regulator nikr | EXX23_09535 | Not Available | Positive | 1980208 - 1980609 | 15094.7 |
| type ii toxin-antitoxin system hicb family antitoxin | EXX23_09540 | Not Available | Negative | 1980729 - 1981088 | 13360.0 |
| type ii toxin-antitoxin system hica family toxin | EXX23_09545 | Not Available | Negative | 1981085 - 1981360 | 10167.4 |
| abc-2 transporter permease | EXX23_09550 | Not Available | Negative | 1981433 - 1982557 | 41050.2 |
| abc transporter atp-binding protein/permease | EXX23_09555 | Not Available | Negative | 1982557 - 1985292 | 100847.0 |
| hlyd family secretion protein | EXX23_09560 | Not Available | Negative | 1985289 - 1986356 | 38858.6 |
| duf4049 domain-containing protein | EXX23_09565 | Not Available | Negative | 1986722 - 1988344 | 61063.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





