Escherichia coli strain EC_57

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain EC_57 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and exhibits mobility due to the presence of flagella. This strain thrives optimally at 37°C and is classified as mesophilic, indicating its preference for moderate temperature ranges. EC_57 is characterized by its ability to exist in pairs or singles and has a biotic relationship categorized as free-living. This strain is notably associated with a diverse range of hosts, including Homo sapiens (humans), various livestock such as Bos taurus (cattle) and Sus scrofa (swine), as well as other vertebrates and invertebrates. The ecological versatility of EC_57 is highlighted by its presence in both mammals and plants, such as Solanum lycopersicum (tomato) and Brassica oleracea var. italica (broccoli). EC_57 is implicated in numerous health effects, particularly in humans, where it is associated with conditions such as urinary tract infections (UTIs), gastrointestinal infections, and severe complications like hemolytic uremic syndrome (HUS) and neonatal meningitis. The strain’s pathogenicity can lead to significant health challenges, including foodborne illnesses and septicemia. In summary, the ecological adaptability and pathogenic potential of Escherichia coli strain EC_57 underscore its importance in both clinical and environmental contexts. Its ability to infect a wide range of hosts highlights its role in the dynamics of microbial communities and the transmission of diseases, reflecting a critical aspect of the interactions between pathogens and their environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain EC_57

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain EC_57
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain EC_57 NODE_168_length_505_cov_121.521028,

Gene Summary

Adenine Count

1412898 bp

Thymine Count

1419984 bp

Guanine Count

1450503 bp

Cytosine Count

1429266 bp

Genome Length

5726298 bp

Protein-coding Genes

5010 genes

Non-Coding Genes

476 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEXX55_14960Not AvailableNegative3074442 - 307587554919.2
hypothetical proteinEXX55_14965Not AvailableNegative3075847 - 307690540247.1
Host cell-killing modulation proteinEXX55_14970Not AvailablePositive3077178 - 30773907861.97
AttrNot AvailableNot AvailablePositive3078642 - 3078654Not Available
AttlNot AvailableNot AvailablePositive3786242 - 3786257Not Available
Zinc-containing alcohol dehydrogenase superfamily proteinEXX55_18505Not AvailablePositive3792927 - 379394636538.1
transporterEXX55_18510Not AvailablePositive3794004 - 37941144038.87
Putative integraseEXX55_18515Not AvailableNegative3794134 - 379541448341.2
Bacteriophage excisionaseEXX55_18520Not AvailableNegative3795449 - 37956859183.07
EndodeoxyribonucleaseEXX55_18525Not AvailableNegative3795773 - 379824492736.5

Displaying genes 241 – 250 of 5501 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total