Escherichia coli strain EC_82

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain EC_82 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism. This strain typically exists in pairs or as single cells and possesses flagella, enabling mobility. Its optimal growth temperature is around 37°C, placing it within the mesophilic temperature range. EC_82 is characterized by having a single replicon and two membranes, which is typical for members of the Enterobacteriaceae family. This strain is primarily host-associated and has been identified in a variety of hosts, including humans (Homo sapiens), domestic animals like chickens (Gallus gallus), cattle (Bos taurus), and various other vertebrates, as well as plants such as tomatoes (Solanum lycopersicum) and broccoli (Brassica oleracea var. italica). Its biotic relationship is categorized as free-living, indicating its ability to survive independently in various environments. E. coli strain EC_82 is notable for its association with a wide range of health effects, particularly in humans, where it is implicated in urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and several other serious conditions. The strain is linked to both foodborne illnesses and infections, highlighting its pathogenic potential. The diverse array of hosts and health impacts associated with EC_82 underscores its ecological versatility and the potential for cross-species transmission. This adaptability suggests a significant role for E. coli in both environmental and clinical contexts, emphasizing the importance of monitoring and understanding its behavior in various habitats to mitigate health risks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain EC_82

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain EC_82
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain EC_82 NODE_94_length_504_cov_71.585480,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4738 genes

Non-Coding Genes

335 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrogenase 3 maturation protein hypcEXX78_11830Not AvailableNegative2449032 - 24493049731.64
hydrogenase nickel incorporation protein hypbEXX78_11835Not AvailableNegative2449295 - 245016731566.8
hydrogenase maturation nickel metallochaperone hypaEXX78_11840Not AvailableNegative2450171 - 245052113168.9
formate hydrogenlyase regulatory protein hycaEXX78_11845Not AvailablePositive2450733 - 245119417627.9
4fe-4s dicluster domain-containing proteinEXX78_11850Not AvailablePositive2451319 - 245193021888.4
formate hydrogenlyase subunit 3EXX78_11855Not AvailablePositive2451927 - 245375364147.2
formate hydrogenlyase subunit hycdEXX78_11860Not AvailablePositive2453756 - 245467933065.4
hydrogenase large subunitEXX78_11865Not AvailablePositive2454697 - 245640664970.1
formate hydrogenlyase subunit hycfEXX78_11870Not AvailablePositive2456416 - 245695820330.4
formate hydrogenlyase subunit hycgEXX78_11875Not AvailablePositive2456958 - 245772528013.8

Displaying genes 2521 – 2530 of 5078 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total