Limnobacter thiooxidans strain DSM 13612

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Limnobacter

Description

Limnobacter thiooxidans strain DSM 13612 is a Gram-negative, aerobic bacterium characterized as an autotroph, lithotroph, and chemotroph. This means that it derives its energy from inorganic compounds, specifically through the oxidation of sulfur. The rod-shaped morphology of this strain facilitates its adaptation to various environments, where it can thrive in the presence of oxygen. The organism is notable for having a single replicon, which is a significant aspect of its genomic structure, as it suggests a streamlined genetic organization that may contribute to its metabolic efficiency. The genetic information for Limnobacter thiooxidans is cataloged under the accession number SGWT00000000.1, indicating its availability for further study and analysis in microbial databases. Ecologically, Limnobacter thiooxidans plays an important role in sulfur cycling within its habitat. By oxidizing sulfur compounds, this bacterium can contribute to the formation of sulfate, which is a vital nutrient for various organisms in its ecosystem. This process not only aids in the recycling of nutrients but also helps maintain the balance of sulfur compounds within the environment. The ability of Limnobacter thiooxidans to thrive in aerobic conditions while utilizing inorganic sulfur compounds underscores its significance in biogeochemical cycles, particularly in sulfur-rich environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusLimnobacter
SpeciesLimnobacter thiooxidans
Strainstrain DSM 13612

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceautotroph; lithotroph; chemotroph
PathogenicityNot Available

Genome Summary

Limnobacter thiooxidans strain DSM 13612 Ga0310520_16, whole

Gene Summary

Adenine Count

827258 bp

Thymine Count

827624 bp

Guanine Count

941287 bp

Cytosine Count

937341 bp

Genome Length

3534063 bp

Protein-coding Genes

3187 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtp cyclohydrolase iEV673_2550Not AvailableNegative2768504 - 276933430761.9
1-deoxy-d-xylulose-5-phosphate synthaseEV673_2551Not AvailableNegative2769342 - 277126169326.4
farnesyl-diphosphate synthaseEV673_2552Not AvailableNegative2771258 - 277216032360.0
exodeoxyribonuclease vii small subunitEV673_2553Not AvailableNegative2772157 - 27724299847.63
phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase large terminal subunitEV673_2554Not AvailablePositive2772603 - 277374844051.8
s-adenosylmethionine uptake transporterEV673_2555Not AvailablePositive2773795 - 277465230061.4
zinc and cadmium transporterEV673_2556Not AvailableNegative2774677 - 277546228082.9
carboxymethylenebutenolidaseEV673_2557Not AvailableNegative2775482 - 277638732358.4
dna polymerase iEV673_2558Not AvailableNegative2776411 - 2779194102645.0
hypothetical proteinEV673_2559Not AvailablePositive2779195 - 277993226934.3

Displaying genes 2541 – 2550 of 3236 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.