Emticicia agri strain 17J42-9

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Leadbetterellaceae

Genus

Emticicia

Description

Emticicia agri strain 17J42-9 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic data for this strain is available under the accession number SEWF00000000.1. As a member of the Emticicia genus, this strain is likely to play a role in ecological processes, particularly in soil environments where it may contribute to nutrient cycling. The Gram-negative classification suggests that Emticicia agri strain 17J42-9 possesses an outer membrane, which can provide advantages in terms of resistance to certain antibiotics and environmental stresses. The rod shape can also facilitate motility and colonization in various substrates, enhancing its ecological interactions. Overall, the traits of Emticicia agri strain 17J42-9 highlight its potential significance in microbial communities, particularly in soil ecosystems where its metabolic capabilities could influence plant health and soil fertility. Understanding the specific roles and interactions of such strains can provide insights into their contributions to ecosystem dynamics and the maintenance of soil biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyLeadbetterellaceae
GenusEmticicia
SpeciesEmticicia agri
Strainstrain 17J42-9

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Emticicia agri strain 17J42-9 scf7180000000961, whole genome

Gene Summary

Adenine Count

2043501 bp

Thymine Count

2043792 bp

Guanine Count

1277631 bp

Cytosine Count

1287830 bp

Genome Length

6665383 bp

Protein-coding Genes

5371 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent fis family transcriptional regulatorEWM59_00300Not AvailablePositive92639 - 9399151114.9
pyridoxamine 5'-phosphate oxidase family proteinEWM59_00305Not AvailableNegative94100 - 9474424036.8
plp-dependent aminotransferase family proteinEWM59_00310Not AvailablePositive94845 - 9630555418.1
spx/mgsr family rna polymerase-binding regulatory proteinEWM59_00315Not AvailableNegative96311 - 9667013681.4
duf4136 domain-containing proteinEWM59_00320Not AvailableNegative96755 - 9730021160.3
duf4136 domain-containing proteinEWM59_00325Not AvailableNegative97311 - 9787121775.9
3-dehydroquinate synthaseEWM59_00330Not AvailableNegative98086 - 9911138124.3
hypothetical proteinEWM59_00335Not AvailableNegative99382 - 996249301.05
sigma-70 family rna polymerase sigma factorEWM59_00340Not AvailableNegative99587 - 10019223619.3
hypothetical proteinEWM59_00345Not AvailablePositive100539 - 10188550774.4

Displaying genes 71 – 80 of 5436 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.