Escherichia coli O25b:H4 strain B1522-PB_2012 unitig_0

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1522-PB_2012 is a Gram-negative, rod-shaped bacterium that plays a notable role in various biological and ecological contexts. This strain is facultatively anaerobic, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It is characterized by its mobility, which is facilitated by the presence of flagella, and typically exists in pairs or singles. The optimal growth temperature for E. coli O25b:H4 strain B1522-PB_2012 is 37°C, placing it within the mesophilic temperature range, which is conducive to its survival in warm-blooded hosts. It has a single replicon and is surrounded by two membranes, consistent with the structure of Gram-negative bacteria. E. coli O25b:H4 strain B1522-PB_2012 is categorized as host-associated, indicating its relationship with living hosts, where it may be found in various environments, including intestinal tracts. Its biotic relationship is described as free-living, suggesting it can also exist independently of a host under suitable conditions. The strain is part of the larger Escherichia genus, which has significant implications for human health and disease. Understanding the traits of E. coli O25b:H4 strain B1522-PB_2012 not only enhances our knowledge of its ecological role but also aids in the assessment of its potential impact on host organisms and the environment. The accession number associated with this strain is SEVW00000000.1, which can be used for further genomic and phenotypic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1522-PB_2012 unitig_0

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1522-PB_2012 unitig_0
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1522-PB_2012 unitig_0, whole

Gene Summary

Adenine Count

1282625 bp

Thymine Count

1290878 bp

Guanine Count

1327808 bp

Cytosine Count

1329690 bp

Genome Length

5231153 bp

Protein-coding Genes

4619 genes

Non-Coding Genes

453 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pp_03154EWT23_16155Not AvailablePositive3181670 - 3182002Not Available
putrescine aminotransferaseEWT23_16160Not AvailableNegative3182044 - 318353453855.5
pas domain s-box proteinEWT23_16165Not AvailablePositive3183841 - 318536155056.0
padr family transcriptional regulatorEWT23_16170Not AvailableNegative3185468 - 318609123363.7
nadph-dependent ferric chelate reductaseEWT23_16180Not AvailablePositive3186379 - 318714328893.1
Trna-metNot AvailableNot AvailablePositive3187197 - 3187272Not Available
g/u mismatch-specific dna glycosylaseEWT23_16190Not AvailablePositive3187397 - 318790318674.5
rna polymerase sigma factor rpodEWT23_16195Not AvailableNegative3187981 - 318982270239.3
dna primaseEWT23_16200Not AvailableNegative3190017 - 319176265598.6
30s ribosomal protein s21EWT23_16205Not AvailableNegative3191873 - 31920888500.42

Displaying genes 3301 – 3310 of 5102 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.