Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe. This strain exhibits mobility due to the presence of flagella, enabling it to move in its environment. It typically exists in pairs or singles and has a mesophilic temperature range, with an optimal growth temperature of 37°C. The organism is host-associated, indicating a potential relationship with various hosts, possibly within a specific ecological niche. It possesses a single replicon and features a double membrane structure, which is characteristic of Gram-negative bacteria. The biotic relationship of E. coli O25b:H4 strain B1137-PB_2011 is classified as free-living, suggesting that it can thrive independently in its environment. The presence of this strain and its traits highlight the versatility and adaptability of E. coli in various ecological contexts, particularly in host-associated environments where it may play roles in digestion or microbial balance. Understanding the characteristics of such strains is crucial for insights into their ecological roles and potential impacts on health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1137-PB_2011 unitig_17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17, whole

Gene Summary

Adenine Count

1327374 bp

Thymine Count

1333408 bp

Guanine Count

1368693 bp

Cytosine Count

1367480 bp

Genome Length

5398641 bp

Protein-coding Genes

4672 genes

Non-Coding Genes

480 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Prevention of host death by doc toxicityEWT52_07290Not AvailableNegative1407253 - 14074748133.53
Putative restriction-modification proteinEWT52_07295Not AvailablePositive1407657 - 140921357736.1
Restriction endonuclease subunit sEWT52_07300Not AvailablePositive1409210 - 141048148202.5
hsdr family type i site-specific deoxyribonucleaseEWT52_07305Not AvailablePositive1410603 - 1413719120041.0
Transposase is1EWT52_07310Not AvailablePositive1413933 - 141463024325.1
hypothetical proteinEWT52_07315Not AvailableNegative1414767 - 141569936203.2
nucleotidyltransferaseEWT52_07320Not AvailableNegative1415703 - 141669837838.7
type ii toxin-antitoxin system antitoxin ccdaEWT52_07325Not AvailablePositive1417406 - 14176248372.8
type ii toxin-antitoxin system toxin ccdbEWT52_07330Not AvailablePositive1417626 - 141793111707.2
Non-functional integraseEWT52_07335Not AvailablePositive1417932 - 141873829602.2

Displaying genes 71 – 80 of 5149 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.