Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe. This strain exhibits mobility due to the presence of flagella, enabling it to move in its environment. It typically exists in pairs or singles and has a mesophilic temperature range, with an optimal growth temperature of 37°C. The organism is host-associated, indicating a potential relationship with various hosts, possibly within a specific ecological niche. It possesses a single replicon and features a double membrane structure, which is characteristic of Gram-negative bacteria. The biotic relationship of E. coli O25b:H4 strain B1137-PB_2011 is classified as free-living, suggesting that it can thrive independently in its environment. The presence of this strain and its traits highlight the versatility and adaptability of E. coli in various ecological contexts, particularly in host-associated environments where it may play roles in digestion or microbial balance. Understanding the characteristics of such strains is crucial for insights into their ecological roles and potential impacts on health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1137-PB_2011 unitig_17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17, whole

Gene Summary

Adenine Count

1327374 bp

Thymine Count

1333408 bp

Guanine Count

1368693 bp

Cytosine Count

1367480 bp

Genome Length

5398641 bp

Protein-coding Genes

4672 genes

Non-Coding Genes

480 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEWT52_19785Not AvailableNegative3988267 - 39884616959.16
type iv toxin-antitoxin system toxin cbtaEWT52_19790Not AvailableNegative3988458 - 398883213830.6
type iv toxin-antitoxin system yeeu family antitoxinEWT52_19795Not AvailableNegative3988921 - 398928913844.5
antitoxin of toxin-antitoxin stability systemEWT52_19800Not AvailableNegative3989305 - 398994924956.0
duf987 domain-containing proteinEWT52_19805Not AvailableNegative3989968 - 39901898409.23
dna repair protein radcEWT52_19810Not AvailableNegative3990252 - 399072817765.5
antirestriction proteinEWT52_19815Not AvailableNegative3990744 - 399121717881.2
antirestriction proteinEWT52_19820Not AvailableNegative3991311 - 39915568886.48
duf945 domain-containing proteinEWT52_19825Not AvailableNegative3991556 - 399237431433.6
hypothetical proteinEWT52_19835Not AvailableNegative3992595 - 399300515152.4

Displaying genes 4051 – 4060 of 5149 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.