Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain C0064-PB_2013 is a notable strain characterized by its rod shape and negative Gram staining. This strain is a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. It typically resides in host-associated habitats, indicating a close relationship with living organisms. In terms of mobility, strain C0064-PB_2013 possesses flagella, which facilitates its movement. This feature, combined with its optimal growth temperature of 37°C, aligns with the mesophilic nature of the organism, as it thrives within a temperature range conducive to human and animal hosts. The bacterium has a simple genomic structure, characterized by a single replicon and two membranes, which is typical for Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it can exist independently outside of a host while still being associated with them. The accessions for this strain are recorded under SEVR00000000.1. The ecological insight drawn from these traits indicates that E. coli O25b:H4 strain C0064-PB_2013 has adapted well to diverse environments, allowing it to thrive in both host-associated and free-living conditions. This adaptability is significant in understanding its role in microbial ecosystems and potential implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain C0064-PB_2013 unitig_0

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0, whole

Gene Summary

Adenine Count

1310914 bp

Thymine Count

1314750 bp

Guanine Count

1362544 bp

Cytosine Count

1354038 bp

Genome Length

5342696 bp

Protein-coding Genes

4675 genes

Non-Coding Genes

523 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oligopeptidase aEWT25_10720Not AvailablePositive2201333 - 220337577185.3
16s rrna (guanine(1516)-n(2))-methyltransferase rsmjEWT25_10725Not AvailablePositive2203383 - 220413526878.7
dipeptide/tripeptide permease dtpbEWT25_10730Not AvailableNegative2204184 - 220565353541.4
universal stress protein uspaEWT25_10740Not AvailableNegative2205970 - 220640416067.3
universal stress protein uspbEWT25_10745Not AvailablePositive2206795 - 220713013028.1
low-affinity inorganic phosphate transporter 1EWT25_10750Not AvailableNegative2207201 - 220870053392.4
nad(p)/fad-dependent oxidoreductaseEWT25_10755Not AvailablePositive2208932 - 221012543485.3
duf2776 family proteinEWT25_10760Not AvailableNegative2210212 - 221126437792.5
hlyd family secretion proteinEWT25_10770Not AvailablePositive2211999 - 221306638732.4
abc transporter atp-binding protein/permeaseEWT25_10775Not AvailablePositive2213063 - 2215798100748.0

Displaying genes 2551 – 2560 of 5208 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.