Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain C0064-PB_2013 is a notable strain characterized by its rod shape and negative Gram staining. This strain is a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. It typically resides in host-associated habitats, indicating a close relationship with living organisms. In terms of mobility, strain C0064-PB_2013 possesses flagella, which facilitates its movement. This feature, combined with its optimal growth temperature of 37°C, aligns with the mesophilic nature of the organism, as it thrives within a temperature range conducive to human and animal hosts. The bacterium has a simple genomic structure, characterized by a single replicon and two membranes, which is typical for Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it can exist independently outside of a host while still being associated with them. The accessions for this strain are recorded under SEVR00000000.1. The ecological insight drawn from these traits indicates that E. coli O25b:H4 strain C0064-PB_2013 has adapted well to diverse environments, allowing it to thrive in both host-associated and free-living conditions. This adaptability is significant in understanding its role in microbial ecosystems and potential implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain C0064-PB_2013 unitig_0

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0, whole

Gene Summary

Adenine Count

1310914 bp

Thymine Count

1314750 bp

Guanine Count

1362544 bp

Cytosine Count

1354038 bp

Genome Length

5342696 bp

Protein-coding Genes

4675 genes

Non-Coding Genes

523 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molecular chaperone skpEWT25_04010Not AvailableNegative800970 - 80145517689.2
outer membrane protein assembly factor bamaEWT25_04015Not AvailableNegative801577 - 80400990557.5
sigma e protease regulator rsepEWT25_04020Not AvailableNegative804039 - 80539149074.2
phosphatidate cytidylyltransferaseEWT25_04025Not AvailableNegative805403 - 80626031511.7
(2e,6e)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthaseEWT25_04030Not AvailableNegative806273 - 80703128314.5
1-deoxy-d-xylulose-5-phosphate reductoisomeraseEWT25_04035Not AvailableNegative807220 - 80841643389.6
ribosome recycling factorEWT25_04040Not AvailableNegative808508 - 80906520639.7
ump kinaseEWT25_04045Not AvailableNegative809215 - 80994025971.9
elongation factor tsEWT25_04050Not AvailableNegative810087 - 81093830424.7
30s ribosomal protein s2EWT25_04055Not AvailableNegative811073 - 81179826745.2

Displaying genes 1261 – 1270 of 5208 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.