Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain C0064-PB_2013 is a notable strain characterized by its rod shape and negative Gram staining. This strain is a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. It typically resides in host-associated habitats, indicating a close relationship with living organisms. In terms of mobility, strain C0064-PB_2013 possesses flagella, which facilitates its movement. This feature, combined with its optimal growth temperature of 37°C, aligns with the mesophilic nature of the organism, as it thrives within a temperature range conducive to human and animal hosts. The bacterium has a simple genomic structure, characterized by a single replicon and two membranes, which is typical for Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it can exist independently outside of a host while still being associated with them. The accessions for this strain are recorded under SEVR00000000.1. The ecological insight drawn from these traits indicates that E. coli O25b:H4 strain C0064-PB_2013 has adapted well to diverse environments, allowing it to thrive in both host-associated and free-living conditions. This adaptability is significant in understanding its role in microbial ecosystems and potential implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain C0064-PB_2013 unitig_0

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0, whole

Gene Summary

Adenine Count

1310914 bp

Thymine Count

1314750 bp

Guanine Count

1362544 bp

Cytosine Count

1354038 bp

Genome Length

5342696 bp

Protein-coding Genes

4675 genes

Non-Coding Genes

523 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proline-specific permease proyEWT25_02860Not AvailableNegative569909 - 57128250218.8
branched-chain amino acid transporter carrier protein brnqEWT25_02865Not AvailableNegative571358 - 57267746225.5
phosphate regulon sensor histidine kinase phorEWT25_02870Not AvailableNegative573084 - 57437949647.4
phosphate response regulator transcription factor phobEWT25_02875Not AvailableNegative574437 - 57512626435.0
exonuclease subunit sbcdEWT25_02880Not AvailablePositive575316 - 57651844627.0
exonuclease subunit sbccEWT25_02885Not AvailablePositive576515 - 579658118603.0
mfs transporter arajEWT25_02890Not AvailablePositive579784 - 58096841987.1
fructokinaseEWT25_02895Not AvailableNegative581237 - 58214532492.6
recombination-associated protein rdgcEWT25_02900Not AvailablePositive582270 - 58318134023.3
hypothetical proteinEWT25_02905Not AvailableNegative583262 - 5833423060.81

Displaying genes 1041 – 1050 of 5208 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.