Escherichia coli O25b:H4 strain C0107-PB_2013 unitig_1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain C0107-PB_2013 is a Gram-negative bacterium characterized by its rod shape and facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. This strain is motile, possessing flagella, which facilitates its movement in host-associated environments. The optimal growth temperature for this strain is 37°C, placing it within the mesophilic temperature range, suitable for thriving in warm-blooded hosts. The strain exhibits a unique cell arrangement, primarily found in pairs and singles, which can influence its interaction with host organisms and the surrounding environment. E. coli O25b:H4 strain C0107-PB_2013 features a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria, which may play a role in its resistance to certain antibiotics and its survival strategies within host-associated habitats. As a free-living organism, this strain of E. coli may also contribute to the microbiota of its host, emphasizing its ecological role in maintaining a balanced microbial community. The accessions for this strain are documented under SEVQ00000000.1, providing a reference for further studies and analyses. In summary, the combination of motility, mesophilic growth conditions, and its Gram-negative nature suggests that Escherichia coli O25b:H4 strain C0107-PB_2013 has adapted well to life in host-associated environments, highlighting its potential significance in both health and disease contexts within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain C0107-PB_2013 unitig_1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain C0107-PB_2013 unitig_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain C0107-PB_2013 unitig_1, whole

Gene Summary

Adenine Count

1332359 bp

Thymine Count

1327240 bp

Guanine Count

1371774 bp

Cytosine Count

1370781 bp

Genome Length

5402229 bp

Protein-coding Genes

4690 genes

Non-Coding Genes

563 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Duf2570 domain-containing proteinEWT47_00195Not AvailableNegative34804 - 3519914535.1
M15 family metallopeptidaseEWT47_00200Not AvailableNegative35196 - 3558814703.4
Holin family proteinEWT47_00205Not AvailableNegative35585 - 3590811447.0
Tail protein xEWT47_00210Not AvailableNegative35911 - 361117479.97
Head completion/stabilization proteinEWT47_00215Not AvailableNegative36111 - 3660518345.5
Terminase endonuclease subunitEWT47_00220Not AvailableNegative36707 - 3750728956.6
Major capsid protein, p2 familyEWT47_00225Not AvailableNegative37553 - 3860539306.5
Capsid scaffolding proteinEWT47_00230Not AvailableNegative38629 - 3946530721.1
Helix-turn-helix domain-containing proteinEWT47_00235Not AvailablePositive39620 - 4137166831.5
Pbsx family portal proteinEWT47_00240Not AvailablePositive41371 - 4241739275.1

Displaying genes 31 – 40 of 5253 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.