Escherichia coli O25b:H4 strain C0114-PB_2013 unitig_0

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain C0114-PB_2013 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. This strain typically resides in host-associated habitats, indicating a close relationship with its host organisms. The organism is characterized by its ability to exist in pairs or singles, a trait often associated with its growth and division patterns. E. coli O25b:H4 strain C0114-PB_2013 possesses flagella, enabling mobility, which may facilitate its movement within host environments or in suitable ecological niches. The optimal growth temperature for this strain is 37°C, which aligns with the typical human body temperature, suggesting its potential pathogenicity in human hosts. The strain is mesophilic, thriving within a temperature range conducive to growth in warm-blooded animals. With a single replicon and a double membrane structure, this strain is representative of typical E. coli physiology. Its biotic relationship is categorized as free-living, indicating its capacity to survive independently of a host under certain conditions. The presence of this strain in host-associated habitats may highlight its role in various ecological interactions, including those related to human health and disease. Understanding its traits can provide insights into its ecological dynamics, pathogenic potential, and contributions to microbial communities within host organisms. The accession number for this strain is SEVP00000000.1, which facilitates further research and identification within microbial databases.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain C0114-PB_2013 unitig_0

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain C0114-PB_2013 unitig_0
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain C0114-PB_2013 unitig_0, whole

Gene Summary

Adenine Count

1285012 bp

Thymine Count

1284008 bp

Guanine Count

1323619 bp

Cytosine Count

1330188 bp

Genome Length

5222977 bp

Protein-coding Genes

4546 genes

Non-Coding Genes

502 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
winged helix-turn-helix domain-containing proteinEWT20_01605Not AvailablePositive253895 - 25512147376.3
protein ycarEWT20_01610Not AvailablePositive255173 - 2553556825.33
3-deoxy-manno-octulosonate cytidylyltransferaseEWT20_01615Not AvailablePositive255352 - 25609827660.1
hypothetical proteinEWT20_01620Not AvailablePositive256252 - 25714534502.6
envelope biogenesis factor elycEWT20_01625Not AvailableNegative257122 - 25790128668.0
trna uridine 5-oxyacetic acid(34) methyltransferase cmomEWT20_01630Not AvailablePositive258037 - 25882229779.9
chromosome partition protein mukfEWT20_01635Not AvailablePositive258819 - 26014150609.8
chromosome partition protein mukeEWT20_01640Not AvailablePositive260122 - 26082626949.0
chromosome partition protein mukbEWT20_01645Not AvailablePositive260826 - 265286170252.0
l,d-transpeptidaseEWT20_01650Not AvailablePositive265547 - 26739467844.3

Displaying genes 661 – 670 of 5067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.