Escherichia coli O25b:H4 strain B1118-PB_2011 unitig_3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1118-PB_2011 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and mobility, facilitated by the presence of flagella. This strain is typically found in host-associated environments and exhibits a cell arrangement primarily in pairs and singles. The optimal growth temperature for this strain is 37°C, placing it within the mesophilic temperature range, which is conducive to its survival and proliferation in warm-blooded hosts. E. coli B1118-PB_2011 possesses a single replicon and features a typical Gram-negative cell structure with two membranes. This strain is categorized as free-living, indicating its capability to live independently, although it is commonly associated with hosts. The ability to thrive in various environments underlines the ecological versatility of E. coli species, particularly in relation to their interactions within both human and animal hosts. Understanding the traits of E. coli O25b:H4 strain B1118-PB_2011 provides insights into its potential roles in microbial ecosystems, including its capacity to contribute to gut microbiota and its implications in health and disease. Such traits may also inform studies on antibiotic resistance and pathogenicity, as this strain belongs to a serotype often associated with extraintestinal infections. The accessions for this strain are noted as SEVK00000000.1, which can be referenced for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1118-PB_2011 unitig_3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1118-PB_2011 unitig_3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1118-PB_2011 unitig_3, whole

Gene Summary

Adenine Count

1326769 bp

Thymine Count

1325057 bp

Guanine Count

1365707 bp

Cytosine Count

1375733 bp

Genome Length

5393494 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

625 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system lipoprotein tssjEWT18_11935Not AvailablePositive2275188 - 227572420531.0
type vi secretion system baseplate subunit tsseEWT18_11940Not AvailablePositive2275728 - 227615616345.9
type vi secretion system protein vaslEWT18_11945Not AvailablePositive2276156 - 227753251935.5
phosphoglycerate dehydrogenaseEWT18_11950Not AvailableNegative2277832 - 227877934341.7
sis domain-containing proteinEWT18_11955Not AvailableNegative2278851 - 227944720884.3
putative c-s lyaseEWT18_11960Not AvailableNegative2279450 - 228062544895.6
pts glucose transporter subunit iibcEWT18_11965Not AvailableNegative2280625 - 228220557668.2
prd domain-containing proteinEWT18_11970Not AvailableNegative2282237 - 228306131967.7
n-acetylmuramoyl-l-alanine amidaseEWT18_11975Not AvailableNegative2283319 - 228457245637.1
amino-acid n-acetyltransferaseEWT18_11980Not AvailablePositive2284804 - 228613549228.2

Displaying genes 2481 – 2490 of 5296 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.