Escherichia coli O25b:H4 strain B1212-PB_2012 unitig_2

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1212-PB_2012 unitig_2 is a Gram-negative, rod-shaped bacterium that is characterized by its ability to exist in host-associated environments. This strain exhibits a cell arrangement of pairs and singles and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions. The optimal temperature for growth is 37°C, which is within the mesophilic temperature range, highlighting its adaptability to warm-blooded hosts. This strain is motile, possessing flagella that enable it to move effectively within its habitat. E. coli O25b:H4 strain B1212-PB_2012 has a single replicon and is surrounded by two membranes, typical of Gram-negative bacteria. It displays a free-living biotic relationship, suggesting that while it may be found in association with hosts, it is capable of independent existence in various environments. The accession number for this strain is SEVH00000000.1, providing a reference for further genomic studies. Understanding the traits of E. coli O25b:H4 strain B1212-PB_2012 can contribute to our knowledge of its ecological role, particularly in relation to its adaptability and mobility in diverse habitats. Its facultative anaerobic nature and mesophilic growth preferences indicate potential interactions with both environmental and host-associated microbial communities, reinforcing its significance in microbiological research and potential implications in health and disease contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1212-PB_2012 unitig_2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1212-PB_2012 unitig_2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1212-PB_2012 unitig_2, whole

Gene Summary

Adenine Count

1306879 bp

Thymine Count

1308628 bp

Guanine Count

1359308 bp

Cytosine Count

1345879 bp

Genome Length

5321227 bp

Protein-coding Genes

4610 genes

Non-Coding Genes

587 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ggdef domain-containing proteinEWT41_24560Not AvailableNegative4855087 - 485657756621.8
ggdef domain-containing proteinEWT41_24565Not AvailableNegative4856758 - 485823356039.6
yeah/yhbh family proteinEWT41_24570Not AvailableNegative4858380 - 485966349453.2
prka family serine protein kinaseEWT41_24575Not AvailableNegative4859776 - 486171074484.3
mlta-interacting proteinEWT41_24580Not AvailablePositive4862146 - 486289227832.4
aldo/keto reductaseEWT41_24585Not AvailablePositive4862982 - 486383630980.5
d-hexose-6-phosphate mutarotaseEWT41_24590Not AvailableNegative4863887 - 486477132652.8
glyceraldehyde-3-phosphate dehydrogenaseEWT41_24595Not AvailableNegative4864855 - 486585035534.5
peptide-methionine (r)-s-oxide reductaseEWT41_24600Not AvailablePositive4866192 - 486660515452.0
duf1315 family proteinEWT41_24605Not AvailablePositive4866647 - 486691910326.5

Displaying genes 4791 – 4800 of 5207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.