Escherichia coli O25b:H4 strain B1316-PB_2011 unitig_5

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1316-PB_2011, represented by the unitig_5, is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It is typically found in host-associated habitats, indicating its role in association with living organisms. The strain is mesophilic, with an optimal growth temperature of 37°C, which aligns with the typical body temperature of warm-blooded hosts. The bacterium has a single replicon and features a double membrane structure, characteristic of Gram-negative bacteria. In terms of cellular arrangement, E. coli B1316-PB_2011 is observed in pairs and singles, suggesting a flexible growth pattern that can adapt to varying environmental conditions. Being free-living, this strain may also play significant roles in various ecological contexts, including interactions with gut microbiota in hosts. Its ability to thrive in diverse environments, coupled with its mobility and adaptability, highlights the ecological importance of E. coli in nutrient cycling and potential implications in health and disease dynamics within host organisms. Overall, the properties of Escherichia coli O25b:H4 strain B1316-PB_2011 underscore its significance in both microbial ecology and pathogenicity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1316-PB_2011 unitig_5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1316-PB_2011 unitig_5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1316-PB_2011 unitig_5, whole

Gene Summary

Adenine Count

1299178 bp

Thymine Count

1301906 bp

Guanine Count

1340165 bp

Cytosine Count

1338753 bp

Genome Length

5280230 bp

Protein-coding Genes

4614 genes

Non-Coding Genes

513 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hth-type transcriptional regulator hdfrEWT21_12105Not AvailablePositive2398352 - 239919131792.1
Trna-trpNot AvailableNot AvailablePositive2399287 - 2399362Not Available
Trna-aspNot AvailableNot AvailablePositive2399371 - 2399447Not Available
Trna-gluNot AvailableNot AvailablePositive2402817 - 2402892Not Available
fadr family transcriptional regulatorEWT21_12140Not AvailablePositive2405000 - 240569226077.5
dha2 family efflux mfs transporter permease subunitEWT21_12145Not AvailablePositive2405715 - 240714251582.0
transcriptional regulator rbsrEWT21_12150Not AvailableNegative2407108 - 240810036614.1
ribokinaseEWT21_12155Not AvailableNegative2408104 - 240903332282.3
ribose abc transporter substrate-binding protein rbsbEWT21_12160Not AvailableNegative2409159 - 241004930940.2
ribose abc transporter permeaseEWT21_12165Not AvailableNegative2410074 - 241103933454.0

Displaying genes 2591 – 2600 of 5132 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.